Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.5e-155 552.7 274 100.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.1e-140 501.9 274 91.2
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.0e-122 443.7 294 77.6
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.8e-122 441.8 297 78.1
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 6.1e-120 434.5 257 85.2
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 3.9e-119 431.8 274 80.3
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.2e-114 416.0 209 96.7
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.2e-114 416.0 209 96.7
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 4.2e-113 411.8 209 96.2
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 5.5e-113 411.4 210 97.6
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 1.2e-112 410.2 209 95.7
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.6e-112 409.8 208 96.2
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.6e-112 409.8 209 95.7
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 3.6e-112 408.7 209 95.7
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 8.0e-112 407.5 208 95.7
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 2.0e-110 402.9 209 95.2
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 4.4e-110 401.7 209 94.7
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 9.7e-110 400.6 209 93.8
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.7e-109 399.8 209 93.8
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.7e-109 399.8 209 93.3
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.7e-109 399.8 209 93.3
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 2.2e-109 399.4 209 93.8
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 8.2e-109 397.5 209 93.3
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.8e-108 396.4 209 93.3
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 1.8e-108 396.4 209 93.3
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.8e-108 396.4 209 93.3
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 2.4e-108 396.0 209 93.3
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 2.0e-107 392.9 266 78.6
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.7e-107 392.5 209 92.8
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 3.5e-107 392.1 209 92.8
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 3.5e-107 392.1 209 92.8
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 3.8e-106 388.7 209 91.9
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 7.2e-105 384.4 196 96.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.6e-104 383.3 196 95.9
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 2.1e-104 382.9 199 94.5
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 8.0e-104 380.9 196 95.4
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 4.4e-102 375.2 209 89.5
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 5.7e-102 374.8 196 94.4
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 2.8e-101 372.5 211 88.6
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.8e-101 372.5 196 93.4
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 8.3e-101 370.9 196 92.9
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 3.5e-99 365.5 188 95.7
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 5.5e-97 358.2 187 94.1
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 5.5e-97 358.2 187 94.1
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 1.8e-95 353.2 209 85.2
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.2e-94 350.5 211 83.9
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 4.9e-93 345.1 209 82.3
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.8e-87 326.6 209 79.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 8.9e-87 324.3 197 83.8
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.2e-78 297.4 158 93.7
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.5e-78 297.0 157 94.3
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.7e-77 293.5 156 92.3
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-77 293.1 201 75.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 3.7e-77 292.4 165 89.7
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 3.9e-74 282.3 196 75.5
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 6.6e-74 281.6 155 91.6
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 6.6e-74 281.6 155 91.6
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.9e-73 280.0 150 92.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 4.0e-71 272.3 148 91.9
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.8e-71 271.6 144 93.8
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 2.2e-69 266.5 143 93.7
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-66 257.3 247 61.9
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 1.5e-65 253.8 129 94.6
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.3e-61 240.7 128 91.4
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 5.4e-60 235.3 120 97.5
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 2.7e-59 233.0 192 64.6
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 6.6e-58 228.4 237 57.8
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.6e-56 223.8 215 53.5
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 9.0e-55 218.0 170 69.4
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-53 213.8 187 63.6
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 3.5e-51 206.1 109 92.7
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 4.6e-51 205.7 115 90.4
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 6.6e-50 201.8 105 95.2
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-47 193.4 188 59.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-46 191.0 182 59.9
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-46 190.7 104 88.5
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 6.4e-45 185.3 169 60.9
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 5.4e-44 182.2 101 91.1
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 8.7e-42 174.9 84 96.4
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-40 169.9 209 48.8
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.9e-39 165.2 89 91.0
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 2.0e-38 163.7 92 87.0
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 7.9e-35 151.8 114 68.4
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.1e-33 147.9 82 90.2
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-33 147.5 148 55.4
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-33 147.1 108 70.4
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.0e-31 139.4 149 54.4
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-29 133.3 83 83.1
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-27 125.2 104 66.3
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 6.7e-26 122.1 63 93.7
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.1e-25 121.3 66 90.9
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 1.6e-24 117.5 69 84.1
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.2e-24 117.1 179 46.9
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 2.8e-24 116.7 205 35.6
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 2.8e-24 116.7 57 94.7
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.3e-24 115.5 135 51.9
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.1e-23 114.8 81 75.3
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.2e-22 111.3 154 46.1
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 1.6e-19 100.9 52 92.3
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.1e-19 100.5 64 78.1
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-17 94.0 67 71.6
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 3.3e-17 93.2 73 67.1
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 4.8e-16 89.4 65 70.8
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 8.2e-16 88.6 47 91.5
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-15 88.2 61 65.6
MELO3C027807.2 Cucumis melo HOM05D039398 ORTHO05D006814 1.8e-15 87.4 50 86.0
MELO3C000713.2 Cucumis melo HOM05D039398 ORTHO05D006814 6.9e-15 85.5 50 82.0
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 2.0e-14 84.0 65 66.2
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.0e-14 84.0 65 60.0
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 2.0e-14 84.0 55 85.5
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 4.5e-14 82.8 45 86.7
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 5.9e-14 82.4 59 71.2
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-13 81.3 56 76.8
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 8.5e-13 78.6 59 72.9
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 9.4e-12 75.1 102 45.1
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.2e-11 74.7 65 60.0
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-11 74.3 84 50.0
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 2.7e-11 73.6 54 68.5
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 2.7e-11 73.6 50 74.0
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 3.0e-10 70.1 50 70.0
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 5.1e-10 69.3 42 78.6
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 8.8e-10 68.6 124 40.3
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.5e-09 67.8 49 71.4
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 4.4e-09 66.2 50 72.0
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 1.3e-08 64.7 50 68.0
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 2.8e-08 63.5 31 90.3
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.8e-08 62.8 49 67.3
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 4.1e-07 59.7 25 100.0
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 5.3e-07 59.3 32 81.2
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.5e-06 57.8 31 80.6
DCAR_022854 Daucus carota HOM05D000144 ORTHO05D010624 1.5e-06 57.8 37 70.3
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.5e-06 56.2 25 92.0


User provided reference genes

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