Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 3.2e-59 231.5 113 100.0
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 2.0e-40 169.1 96 87.5
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 1.7e-39 166.0 99 80.8
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.2e-39 165.6 97 83.5
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 2.2e-39 165.6 97 83.5
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 2.2e-39 165.6 97 83.5
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 6.3e-39 164.1 97 82.5
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 6.3e-39 164.1 97 82.5
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 8.3e-39 163.7 97 81.4
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 1.4e-38 162.9 97 82.5
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 3.1e-38 161.8 97 80.4
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 9.1e-38 160.2 97 80.4
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 9.1e-38 160.2 97 80.4
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 1.2e-37 159.8 97 80.4
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 1.6e-37 159.5 97 80.4
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 1.6e-37 159.5 97 79.4
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.7e-37 158.7 96 80.2
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 2.7e-37 158.7 96 80.2
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 4.5e-37 157.9 97 79.4
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 4.5e-37 157.9 97 78.4
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 4.5e-37 157.9 97 79.4
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 5.9e-37 157.5 97 80.4
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 7.7e-37 157.1 97 79.4
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 7.7e-37 157.1 97 77.3
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 2.9e-36 155.2 97 78.4
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 2.9e-36 155.2 97 77.3
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 1.9e-35 152.5 97 76.3
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 1.9e-35 152.5 97 76.3
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.2e-35 151.8 97 75.3
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 1.6e-34 149.4 97 78.4
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 4.7e-34 147.9 97 73.2
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 4.7e-34 147.9 97 73.2
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 1.4e-33 146.4 99 72.7
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 5.2e-33 144.4 97 74.2
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 1.3e-31 139.8 83 83.1
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 1.8e-30 136.0 97 68.0
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 4.1e-30 134.8 88 76.1
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 1.0e-28 130.2 87 72.4
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.3e-27 124.0 83 72.3
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 2.8e-26 122.1 77 81.8
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 6.1e-26 120.9 97 66.0
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 8.0e-26 120.6 83 69.9
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.4e-25 119.8 97 66.0
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 8.9e-25 117.1 70 80.0
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.9e-25 117.1 82 69.5
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 1.5e-24 116.3 70 80.0
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.3e-20 103.2 66 77.3
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 1.6e-18 96.3 57 80.7
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 1.6e-18 96.3 57 80.7
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 3.1e-17 92.0 72 65.3
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 1.2e-16 90.1 57 75.4
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 6.4e-15 84.3 63 68.3
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 3.9e-12 75.1 45 82.2
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.6e-12 74.3 55 67.3
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.6e-12 74.3 69 55.1
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 6.2e-10 67.8 44 72.7
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 4.0e-09 65.1 44 70.5
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 1.5e-08 63.2 38 76.3
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 1.7e-07 59.7 53 56.6
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 2.2e-07 59.3 62 54.8
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 2.2e-07 59.3 38 71.1
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 3.2e-06 55.5 34 76.5
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 7.1e-06 54.3 36 75.0


User provided reference genes

Program Settings