Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 7.5e-139 497.3 269 100.0
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 5.6e-126 454.5 269 91.8
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.8e-117 425.6 269 87.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 4.6e-104 381.7 269 78.8
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 3.2e-81 305.8 254 69.3
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 2.9e-74 282.7 271 64.9
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 3.0e-39 166.4 272 44.9
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.8e-36 157.1 289 41.5
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 9.5e-33 144.8 275 41.5
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 5.7e-30 135.6 273 40.3
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.7e-29 134.0 257 40.5
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.8e-29 133.3 296 38.5
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 3.7e-29 132.9 224 43.8
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 8.3e-29 131.7 267 41.6
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.4e-28 131.0 267 41.6
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 5.4e-28 129.0 254 40.9
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 7.0e-28 128.6 269 41.6
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.5e-27 126.3 223 40.4
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.3e-26 124.4 274 38.0
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.7e-26 124.0 275 39.3
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 3.8e-26 122.9 302 35.4
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 5.0e-26 122.5 277 35.4
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 6.6e-26 122.1 267 37.8
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.5e-25 120.9 275 38.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.9e-25 120.6 254 41.3
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 3.3e-25 119.8 264 38.6
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.3e-25 119.8 278 36.3
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 5.6e-25 119.0 257 38.9
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 9.5e-25 118.2 277 37.5
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.2e-24 117.9 305 34.1
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.6e-24 117.5 269 39.0
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 1.6e-24 117.5 275 34.9
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 2.8e-24 116.7 292 37.0
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 3.6e-24 116.3 265 37.4
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.6e-24 116.3 263 37.6
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 8.0e-24 115.2 286 36.4
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 8.0e-24 115.2 277 37.9
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 8.0e-24 115.2 260 38.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.0e-23 114.8 280 38.6
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 1.0e-23 114.8 272 37.5
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.4e-23 114.4 267 37.1
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.4e-23 114.4 280 37.5
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 2.3e-23 113.6 283 34.3
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 3.0e-23 113.2 274 39.1
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 6.8e-23 112.1 285 35.4
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 6.8e-23 112.1 268 38.4
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.2e-22 111.3 276 39.9
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.2e-22 111.3 280 38.6
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.5e-22 110.9 271 33.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.5e-22 110.9 280 38.9
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.6e-22 110.2 274 36.9
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 2.6e-22 110.2 280 38.6
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.4e-22 109.8 109 63.3
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.4e-22 109.8 277 34.7
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.4e-22 109.8 269 34.9
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 7.5e-22 108.6 273 37.7
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.7e-21 107.5 278 39.2
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.2e-21 107.1 281 38.8
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 2.2e-21 107.1 262 35.9
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 2.2e-21 107.1 273 35.5
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 3.7e-21 106.3 279 38.0
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 3.7e-21 106.3 261 34.9
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 4.9e-21 105.9 258 36.4
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.1e-20 104.8 273 34.8
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 2.4e-20 103.6 239 33.9
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.4e-20 103.6 258 35.7
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 5.4e-20 102.4 140 47.9
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 7.0e-20 102.1 219 39.3
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.2e-19 101.3 161 44.1
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.6e-19 100.9 224 34.4
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 3.5e-19 99.8 276 33.0
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.5e-19 99.8 255 32.9
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 7.8e-19 98.6 266 34.2
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 7.8e-19 98.6 273 33.3
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 7.8e-19 98.6 253 33.6
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-18 97.8 261 33.3
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.3e-18 97.8 296 34.8
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.3e-18 97.8 288 35.1
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 2.3e-18 97.1 225 39.6
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.0e-18 96.7 278 30.2
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.0e-18 96.7 275 32.0
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 3.9e-18 96.3 268 35.4
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 3.9e-18 96.3 268 35.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 3.9e-18 96.3 126 50.0
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 5.0e-18 95.9 281 30.6
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.6e-18 95.5 266 32.7
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 8.6e-18 95.1 258 33.3
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 1.1e-17 94.7 218 36.2
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-17 94.4 267 31.8
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.5e-17 94.4 264 31.1
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 2.5e-17 93.6 278 32.4
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.5e-17 93.6 285 33.0
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 4.3e-17 92.8 190 36.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 5.6e-17 92.4 268 35.4
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 5.6e-17 92.4 268 35.4
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 5.6e-17 92.4 268 35.4
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.6e-17 92.4 285 33.0
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 9.5e-17 91.7 300 32.3
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 9.5e-17 91.7 211 36.0
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 9.5e-17 91.7 286 33.9
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.1e-16 90.5 274 31.4
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 4.7e-16 89.4 255 32.9
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.1e-15 88.2 274 32.5
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.4e-15 87.8 102 56.9
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.4e-15 87.8 227 33.5
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.4e-15 87.8 278 34.2
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.4e-15 87.8 315 33.3
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.1e-15 86.7 270 30.0
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 3.1e-15 86.7 197 34.0
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 3.1e-15 86.7 197 34.0
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 6.8e-15 85.5 274 32.1
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 6.8e-15 85.5 270 34.8
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.2e-14 84.7 301 32.2
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.6e-14 83.6 272 29.4
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 3.4e-14 83.2 288 30.6
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 3.4e-14 83.2 279 34.4
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 4.4e-14 82.8 275 30.9
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 7.5e-14 82.0 308 29.5
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-13 81.3 267 29.6
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.2e-13 80.5 298 29.9
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 3.7e-13 79.7 218 31.7
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 6.4e-13 79.0 294 31.0
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 8.3e-13 78.6 58 67.2
MELO3C009867.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.4e-12 77.8 123 44.7
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 1.9e-12 77.4 264 30.7
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 2.4e-12 77.0 168 35.7
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 4.1e-12 76.3 269 32.0
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.2e-11 74.7 271 30.3
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.0e-11 73.9 73 53.4
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 3.5e-11 73.2 268 29.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 7.8e-11 72.0 256 30.9
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.3e-10 71.2 283 26.5
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.7e-10 70.9 231 34.6
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 5.0e-10 69.3 127 40.9
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 6.6e-10 68.9 277 31.0
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 6.6e-10 68.9 44 72.7
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.6e-10 68.6 266 25.2
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.5e-09 67.0 45 71.1
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 5.6e-09 65.9 276 28.3
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 5.6e-09 65.9 46 71.7
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 9.5e-09 65.1 39 76.9
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.2e-08 64.7 58 53.4
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 1.2e-08 64.7 223 29.1
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 3.6e-08 63.2 229 31.0
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.4e-07 61.2 219 32.4
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 1.8e-07 60.8 36 83.3
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.3e-07 60.5 265 26.0
Pp3c2_18130 Physcomitrium patens HOM05D027683 ORTHO05D003557 4.0e-07 59.7 39 74.4
MELO3C028918.2 Cucumis melo HOM05D004299 ORTHO05D003557 5.2e-07 59.3 35 80.0
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 5.2e-07 59.3 293 30.0
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 1.2e-06 58.2 71 43.7
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 1.2e-06 58.2 278 26.6
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 1.5e-06 57.8 36 75.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 1.5e-06 57.8 36 75.0
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 2.0e-06 57.4 288 28.8
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 2.0e-06 57.4 40 62.5
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 3.4e-06 56.6 59 45.8
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 3.4e-06 56.6 201 31.3
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 9.9e-06 55.1 159 32.1
MELO3C027639.2 Cucumis melo HOM05D013728 ORTHO05D003557 9.9e-06 55.1 51 58.8


User provided reference genes

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