Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.9e-56 222.2 107 100.0
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 7.6e-10 67.4 41 85.4
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 7.6e-10 67.4 41 85.4
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 1.7e-09 66.2 34 91.2
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.9e-08 62.8 34 85.3
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 2.5e-08 62.4 41 80.5
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 9.3e-08 60.5 41 73.2
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.6e-07 59.7 39 71.8
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 1.6e-07 59.7 68 52.9
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 2.1e-07 59.3 64 48.4
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 2.7e-07 58.9 41 70.7
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 2.7e-07 58.9 41 68.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 2.7e-07 58.9 33 81.8
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 4.6e-07 58.2 42 69.0
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.6e-07 58.2 38 71.1
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 6.0e-07 57.8 38 73.7
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 6.0e-07 57.8 34 79.4
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 6.0e-07 57.8 41 68.3
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 6.0e-07 57.8 33 78.8
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 7.9e-07 57.4 38 71.1
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 7.9e-07 57.4 33 78.8
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 7.9e-07 57.4 42 66.7
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 7.9e-07 57.4 38 71.1
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.0e-06 57.0 74 44.6
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.0e-06 57.0 34 76.5
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.0e-06 57.0 34 76.5
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.3e-06 56.6 33 75.8
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.3e-06 56.6 33 75.8
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.3e-06 56.6 43 60.5
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.8e-06 56.2 34 73.5
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.3e-06 55.8 39 64.1
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 2.3e-06 55.8 34 73.5
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 3.0e-06 55.5 32 81.2
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 3.0e-06 55.5 32 81.2
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 3.0e-06 55.5 39 69.2
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 3.0e-06 55.5 39 74.4
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.0e-06 55.5 39 74.4
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.0e-06 55.5 39 74.4
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 3.0e-06 55.5 67 47.8
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 3.0e-06 55.5 32 81.2
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 3.0e-06 55.5 39 74.4
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.9e-06 55.1 40 67.5
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.9e-06 55.1 40 67.5
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 3.9e-06 55.1 40 70.0
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 3.9e-06 55.1 34 73.5
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 5.1e-06 54.7 33 72.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 5.1e-06 54.7 40 65.0
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 6.7e-06 54.3 34 73.5
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 6.7e-06 54.3 28 85.7
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 6.7e-06 54.3 40 65.0
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 8.7e-06 53.9 34 73.5
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 8.7e-06 53.9 38 63.2
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 8.7e-06 53.9 38 68.4
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 8.7e-06 53.9 39 71.8
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 8.7e-06 53.9 39 66.7
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 8.7e-06 53.9 39 66.7
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 8.7e-06 53.9 39 66.7
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 8.7e-06 53.9 34 70.6


User provided reference genes

Program Settings