Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 4.2e-259 897.5 453 100.0
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.1e-240 836.3 454 94.3
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 2.8e-231 805.1 459 89.5
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 2.8e-202 708.8 458 79.5
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 1.2e-141 507.3 466 59.4
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 7.4e-139 498.0 453 58.5
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 4.8e-138 495.4 402 65.2
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.1e-137 494.2 393 65.9
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 2.4e-137 493.0 400 61.8
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 4.1e-137 492.3 406 60.1
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.2e-136 490.7 364 67.6
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 5.0e-135 485.3 383 66.3
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 6.5e-135 485.0 439 59.0
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 1.1e-134 484.2 460 58.5
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.1e-134 484.2 358 66.5
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 1.2e-133 480.7 436 58.5
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 2.7e-133 479.6 354 66.7
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 1.8e-132 476.9 376 63.6
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 1.8e-132 476.9 449 56.3
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 3.9e-132 475.7 420 58.6
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 5.1e-132 475.3 367 64.0
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.0e-131 473.4 394 60.7
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 2.0e-131 473.4 358 65.9
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.6e-131 473.0 398 60.3
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 2.2e-130 469.9 362 65.5
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 5.3e-129 465.3 466 56.0
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 7.0e-129 464.9 359 65.7
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 2.0e-128 463.4 449 55.9
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 1.0e-127 461.1 351 65.8
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 2.9e-127 459.5 446 55.6
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 2.9e-127 459.5 391 60.9
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 6.5e-127 458.4 444 56.5
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 1.1e-126 457.6 468 53.6
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 3.2e-126 456.1 372 62.6
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 3.2e-126 456.1 444 56.3
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 4.2e-126 455.7 375 62.1
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 5.5e-126 455.3 369 61.5
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 9.4e-126 454.5 405 59.3
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 1.2e-125 454.1 407 56.8
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 2.1e-125 453.4 363 62.8
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 4.7e-125 452.2 422 57.3
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 4.7e-125 452.2 455 52.7
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.6e-123 446.4 349 65.0
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 2.6e-123 446.4 377 60.2
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.6e-123 446.4 428 55.6
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 7.4e-123 444.9 392 59.9
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.7e-122 443.7 355 62.8
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 1.7e-122 443.7 442 53.2
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 4.8e-122 442.2 474 50.8
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 1.8e-121 440.3 356 61.2
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 1.8e-121 440.3 351 64.1
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 1.8e-121 440.3 433 54.3
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 2.4e-121 439.9 423 57.0
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 2.4e-121 439.9 356 63.5
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.3e-121 438.7 359 61.3
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 5.3e-121 438.7 373 61.1
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.5e-120 435.6 326 66.3
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 4.5e-120 435.6 355 60.8
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 7.7e-120 434.9 365 60.0
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 2.2e-119 433.3 355 60.8
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 3.8e-119 432.6 430 54.2
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 3.8e-119 432.6 343 61.5
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.5e-118 429.9 372 59.4
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 2.5e-118 429.9 414 56.5
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 2.5e-118 429.9 287 72.5
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 2.7e-117 426.4 433 53.1
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.6e-117 426.0 349 62.5
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.8e-116 423.7 394 56.9
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 5.2e-116 422.2 334 63.8
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 5.2e-116 422.2 398 56.3
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 6.7e-116 421.8 350 61.7
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 2.2e-114 416.8 325 64.9
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 1.1e-113 414.5 314 64.6
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.8e-113 413.7 300 66.0
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.6e-112 410.6 360 56.7
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 4.5e-112 409.1 415 55.2
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.5e-112 409.1 348 60.9
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.8e-111 406.0 374 57.2
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 6.5e-111 405.2 357 59.4
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 1.9e-110 403.7 357 56.6
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 1.9e-110 403.7 322 61.5
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 4.2e-110 402.5 325 62.5
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 1.2e-109 401.0 356 58.4
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 1.8e-108 397.1 354 57.3
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.4e-107 392.5 329 60.5
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 5.7e-107 392.1 381 55.6
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 3.3e-102 376.3 294 60.9
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 3.3e-102 376.3 544 42.6
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 3.0e-100 369.8 308 64.3
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 5.2e-100 369.0 310 59.0
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 8.9e-100 368.2 381 51.2
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 3.4e-99 366.3 308 64.3
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 9.2e-97 358.2 333 56.8
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 1.5e-94 350.9 257 65.8
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 1.2e-91 341.3 248 66.9
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.5e-88 329.7 374 49.7
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 1.1e-81 308.1 375 49.6
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.6e-77 294.3 328 50.6
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 3.6e-77 293.1 294 56.1
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 1.1e-73 281.6 239 59.0
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.2e-67 261.5 275 50.9
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 4.9e-66 256.1 210 60.5
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.4e-65 254.6 341 42.5
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.9e-65 254.2 297 43.4
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 1.6e-61 241.1 271 51.3
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.8e-60 237.7 249 52.6
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 2.4e-60 237.3 286 48.6
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 3.8e-58 229.9 218 54.1
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 2.8e-53 213.8 187 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 3.4e-51 206.8 241 46.5
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 3.4e-51 206.8 189 54.0
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 5.4e-49 199.5 303 39.3
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 6.2e-45 186.0 202 50.0
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 3.8e-34 150.2 194 48.5
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 8.4e-34 149.1 150 53.3
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 7.1e-33 146.0 186 44.1
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 2.7e-32 144.1 168 47.0
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 1.5e-30 138.3 112 57.1
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 1.0e-26 125.6 232 37.5
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 5.0e-26 123.2 86 66.3
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 3.2e-25 120.6 82 65.9
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 2.7e-24 117.5 188 42.6
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 5.1e-23 113.2 358 27.9
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 8.8e-23 112.5 195 39.5
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.1e-22 112.1 337 29.1
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 3.3e-22 110.5 98 58.2
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 5.7e-22 109.8 193 36.8
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 3.7e-21 107.1 94 57.4
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 6.3e-21 106.3 104 55.8
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 1.4e-20 105.1 78 66.7
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.8e-20 104.8 216 36.6
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 6.9e-20 102.8 63 76.2
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 1.2e-19 102.1 141 44.7
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 5.9e-19 99.8 181 33.1
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 1.0e-18 99.0 107 50.5
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 1.0e-15 89.0 315 26.7
Mapoly0003s0267 Marchantia polymorpha HOM05D032652 ORTHO05D005510 1.5e-14 85.1 328 25.9
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 5.7e-14 83.2 299 26.8
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 1.3e-13 82.0 58 65.5
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 1.3e-13 82.0 100 48.0
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 1.0e-10 72.4 58 55.2
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.7e-10 71.6 266 28.2
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 3.8e-10 70.5 265 24.5
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 3.2e-09 67.4 254 26.0
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 9.4e-09 65.9 317 24.6
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.8e-07 61.6 62 46.8
CBR_g49491 Chara braunii HOM05D005158 ORTHO05D005510 3.3e-06 57.4 220 23.6


User provided reference genes

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