Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G014700 Cucumis sativus L. HOM05D007681 ORTHO05D009734 1.5e-89 332.8 166 100.0
ClCG07G005970 Citrullus lanatus HOM05D007681 ORTHO05D009734 2.3e-66 255.8 166 80.7
MELO3C026423.2 Cucumis melo HOM05D007681 ORTHO05D009734 8.1e-51 204.1 128 83.6
Sed0010427 Sechium edule HOM05D007681 ORTHO05D009734 3.1e-50 202.2 167 66.5
Cfa014982 Carpinus fangiana HOM05D007681 ORTHO05D009734 9.3e-39 164.1 175 53.1
CiPaw.06G048600 Carya illinoinensis HOM05D007681 ORTHO05D009734 3.0e-37 159.1 172 51.2
Prupe.1G330200 Prunus persica HOM05D007681 ORTHO05D009734 6.7e-37 157.9 180 50.0
CANSAT01G2988 Cannabis sativa HOM05D007681 ORTHO05D009734 1.4e-34 150.2 169 50.3
MD13G1021700 Malus domestica HOM05D007681 ORTHO05D009734 5.8e-33 144.8 181 48.1
FvH4_4g34062 Fragaria vesca HOM05D007681 ORTHO05D009734 4.2e-31 138.7 178 48.3
Cpa.g.sc2.238 Carica papaya HOM05D007681 ORTHO05D009734 1.6e-30 136.7 169 46.2
FAN17G1502 Fragaria x ananassa HOM05D007681 ORTHO05D009734 1.6e-30 136.7 182 48.4
RcHm_v2.0_Chr4g0443571 Rosa chinensis HOM05D007681 ORTHO05D009734 1.3e-29 133.7 183 47.0
Thecc.02G287600 Theobroma cacao HOM05D007681 ORTHO05D009734 1.8e-29 133.3 168 49.4
FAN22G1679 Fragaria x ananassa HOM05D007681 ORTHO05D009734 2.3e-29 132.9 180 47.2
Gorai.002G176600 Gossypium raimondii HOM05D007681 ORTHO05D009734 3.0e-29 132.5 111 59.5
Gohir.1Z015700 Gossypium hirsutum HOM05D007681 ORTHO05D009734 3.9e-29 132.1 111 59.5
Gohir.A01G150154 Gossypium hirsutum HOM05D007681 ORTHO05D009734 3.9e-29 132.1 111 59.5
Lj5g0022624 Lotus japonicus HOM05D007681 ORTHO05D009734 1.1e-28 130.6 166 46.4
TWI77G0184 Tripterygium wilfordii HOM05D007681 ORTHO05D009734 1.1e-28 130.6 118 57.6
Sp2g13030 Schrenkiella parvula HOM05D007681 ORTHO05D009734 1.9e-28 129.8 165 46.7
Actinidia36647 Actinidia chinensis HOM05D007681 ORTHO05D009734 2.5e-28 129.4 169 45.0
Ca_12590_v3 Cicer arietinum L. HOM05D007681 ORTHO05D009734 2.5e-28 129.4 171 47.4
Gohir.D01G143200 Gossypium hirsutum HOM05D007681 ORTHO05D009734 2.5e-28 129.4 111 58.6
CARHR144140 Cardamine hirsuta HOM05D007681 ORTHO05D009734 1.6e-27 126.7 166 45.2
A02p32170 Brassica napus HOM05D007681 ORTHO05D009734 4.8e-27 125.2 166 46.4
BcaB07g30389 Brassica carinata HOM05D007681 ORTHO05D009734 8.2e-27 124.4 167 46.1
BolC2t11054H Brassica oleracea HOM05D007681 ORTHO05D009734 8.2e-27 124.4 167 45.5
Thhalv10005039m.g Eutrema salsugineum HOM05D007681 ORTHO05D009734 8.2e-27 124.4 168 45.8
BcaC03g17055 Brassica carinata HOM05D007681 ORTHO05D009734 1.1e-26 124.0 165 42.4
C02p49750 Brassica napus HOM05D007681 ORTHO05D009734 2.4e-26 122.9 165 41.8
Psat6g044480 Pisum sativum HOM05D007681 ORTHO05D009734 2.4e-26 122.9 184 42.4
Lj2g0022739 Lotus japonicus HOM05D007681 ORTHO05D009734 4.0e-26 122.1 122 50.8
BraA02t08231Z Brassica rapa HOM05D007681 ORTHO05D009734 6.9e-26 121.3 166 45.8
AL5G10680 Arabidopsis lyrata HOM05D007681 ORTHO05D009734 9.0e-26 120.9 168 44.0
Dinv28046 Davidia involucrata HOM05D007681 ORTHO05D009734 1.2e-25 120.6 111 51.4
TPR.G36897 Trifolium pratense HOM05D007681 ORTHO05D009734 1.2e-25 120.6 186 44.1
Eucgr.B02939 Eucalyptus grandis HOM05D007681 ORTHO05D009734 3.4e-25 119.0 149 43.6
Lalb_Chr10g0095991 Lupinus albus HOM05D007681 ORTHO05D009734 3.4e-25 119.0 179 43.0
Migut.L00587 Erythranthe guttata HOM05D007681 ORTHO05D009734 4.5e-25 118.6 177 43.5
Atru.chr11.647 Acer truncatum HOM05D007681 ORTHO05D009734 7.6e-25 117.9 109 52.3
Aa31LG2G8310 Aethionema arabicum HOM05D007681 ORTHO05D009734 7.6e-25 117.9 175 44.6
Ciclev10016943m.g Citrus clementina HOM05D007681 ORTHO05D009734 7.6e-25 117.9 151 42.4
Lsat_1_v5_gn_8_44280 Lactuca sativa HOM05D007681 ORTHO05D009734 7.6e-25 117.9 151 44.4
TAR629G0584 Trochodendron aralioides HOM05D007681 ORTHO05D009734 2.9e-24 115.9 148 43.2
Oeu063591.1 Olea europaea HOM05D007681 ORTHO05D009734 3.8e-24 115.5 167 42.5
Medtr1g031740 Medicago truncatula HOM05D007681 ORTHO05D009734 6.5e-24 114.8 134 47.8
ECA233G2077 Erigeron canadensis HOM05D007681 ORTHO05D009734 1.1e-23 114.0 111 50.5
Glyma.07G166400 Glycine max HOM05D007681 ORTHO05D009734 1.1e-23 114.0 168 39.9
AT2G01590 Arabidopsis thaliana HOM05D007681 ORTHO05D009734 2.5e-23 112.8 180 40.0
Nn3g18293 Nelumbo nucifera HOM05D007681 ORTHO05D009734 5.5e-23 111.7 110 55.5
Carub.0005s0053 Capsella rubella HOM05D007681 ORTHO05D009734 7.1e-23 111.3 173 42.8
Hma1.2p1_0330F.1_g127440 Hydrangea macrophylla HOM05D007681 ORTHO05D009734 7.1e-23 111.3 161 41.6
Nitab4.5_0001343g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 9.3e-23 110.9 172 40.7
PGR102G0336 Punica granatum HOM05D007681 ORTHO05D009734 9.3e-23 110.9 170 38.8
MSTRG.7616 Avicennia marina HOM05D007681 ORTHO05D009734 2.1e-22 109.8 161 39.1
AUR62013520 Chenopodium quinoa HOM05D007681 ORTHO05D009734 6.1e-22 108.2 141 41.8
Manes.15G131200 Manihot esculenta HOM05D007681 ORTHO05D009734 6.1e-22 108.2 180 37.2
Nitab4.5_0012949g0010 Nicotiana tabacum HOM05D007681 ORTHO05D009734 6.1e-22 108.2 189 38.6
Phvul.003G022100 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 7.9e-22 107.8 140 42.9
EL10Ac1g01492 Beta vulgaris HOM05D007681 ORTHO05D009734 3.0e-21 105.9 139 42.4
unitig_26.g8951 Utricularia gibba HOM05D007681 ORTHO05D009734 3.0e-21 105.9 167 37.7
AUR62026755 Chenopodium quinoa HOM05D007681 ORTHO05D009734 3.9e-21 105.5 175 37.1
GSVIVG01011705001 Vitis vinifera HOM05D007681 ORTHO05D009734 6.7e-21 104.8 148 42.6
PSO478G3571 Papaver somniferum HOM05D007681 ORTHO05D009734 1.9e-20 103.2 169 39.1
PSO017G3157 Papaver somniferum HOM05D007681 ORTHO05D009734 5.7e-20 101.7 111 45.9
Potri.010G110100 Populus trichocarpa HOM05D007681 ORTHO05D009734 5.7e-20 101.7 109 47.7
PGSC0003DMG400015899 Solanum tuberosum HOM05D007681 ORTHO05D009734 7.4e-20 101.3 141 38.3
Rhsim09G0093700 Rhododendron simsii HOM05D007681 ORTHO05D009734 9.7e-20 100.9 104 51.0
Solyc05g026570.3 Solanum lycopersicum HOM05D007681 ORTHO05D009734 2.2e-19 99.8 141 37.6
Sopen05g023100 Solanum pennellii HOM05D007681 ORTHO05D009734 2.2e-19 99.8 141 37.6
Aqoxy3G00048 Aquilegia oxysepala HOM05D007681 ORTHO05D009734 3.7e-19 99.0 161 39.8
Sabra10G0080500 Salix brachista HOM05D007681 ORTHO05D009734 8.2e-19 97.8 181 35.9
HanXRQChr12g0363581 Helianthus annuus HOM05D007681 ORTHO05D009734 1.1e-18 97.4 163 36.8
arahy.Tifrunner.gnm1.ann1.2VU2GF Arachis hypogaea HOM05D007681 ORTHO05D009734 2.4e-18 96.3 95 54.7
arahy.Tifrunner.gnm1.ann1.W0FD01 Arachis hypogaea HOM05D007681 ORTHO05D009734 4.1e-18 95.5 130 43.8
COL.COLO4_13100 Corchorus olitorius HOM05D006947 ORTHO05D008818 4.1e-18 95.5 126 47.6
Nitab4.5_0000018g0170 Nicotiana tabacum HOM05D007681 ORTHO05D009734 5.9e-17 91.7 123 43.9
Peaxi162Scf00376g00013 Petunia axillaris HOM05D007681 ORTHO05D009734 2.9e-16 89.4 74 54.1
Lj6A742G71 Lonicera japonica HOM05D007681 ORTHO05D009734 4.2e-15 85.5 86 48.8
THA.LOC104805073 Tarenaya hassleriana HOM05D007681 ORTHO05D009734 7.2e-15 84.7 166 38.6
QL03p033908 Quercus lobata HOM05D007681 ORTHO05D009734 6.7e-13 78.2 80 47.5
Ah.01g006360 Amaranthus hybridus HOM05D007681 ORTHO05D009734 1.7e-11 73.6 111 40.5
Phvul.005G062000 Phaseolus vulgaris HOM05D007681 ORTHO05D009734 3.7e-11 72.4 68 52.9
Zm00001eb309450 Zea mays HOM05D007681 ORTHO05D009734 9.1e-10 67.8 113 36.3
Os09g0306650 Oryza sativa ssp. japonica HOM05D007681 ORTHO05D009734 2.0e-09 66.6 125 34.4
MBI16_g06252_MAGBIO Magnolia biondii HOM05D007681 ORTHO05D009734 1.0e-08 64.3 87 39.1


User provided reference genes

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