Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.3e-66 255.4 123 100.0
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 1.9e-65 252.3 123 98.4
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 6.2e-64 247.3 123 96.7
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 5.4e-60 234.2 122 91.8
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 2.1e-59 232.3 123 89.4
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 2.1e-59 232.3 123 90.2
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 2.1e-59 232.3 122 89.3
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.5e-59 231.5 122 91.0
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 7.8e-59 230.3 123 88.6
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 1.0e-58 229.9 121 90.9
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 1.3e-58 229.6 123 89.4
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 1.7e-58 229.2 118 92.4
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 5.1e-58 227.6 123 87.0
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 8.7e-58 226.9 123 86.2
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 1.5e-57 226.1 118 91.5
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 1.5e-57 226.1 121 89.3
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 1.9e-57 225.7 115 91.3
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 2.5e-57 225.3 123 87.8
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 4.3e-57 224.6 123 86.2
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 5.6e-57 224.2 123 85.4
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.3e-57 223.8 123 87.0
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.3e-57 223.8 123 87.0
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.3e-57 223.8 123 87.0
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 7.3e-57 223.8 123 85.4
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 7.3e-57 223.8 123 85.4
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 7.3e-57 223.8 123 87.0
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 1.2e-56 223.0 123 85.4
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.6e-56 222.6 123 85.4
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 1.6e-56 222.6 123 85.4
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 1.6e-56 222.6 123 87.8
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 2.1e-56 222.2 120 85.8
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 2.1e-56 222.2 123 84.6
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 2.1e-56 222.2 123 84.6
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.8e-56 221.9 121 85.1
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 3.6e-56 221.5 123 83.7
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 4.7e-56 221.1 123 83.7
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 4.7e-56 221.1 123 86.2
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 4.7e-56 221.1 123 82.9
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 4.7e-56 221.1 122 83.6
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 8.1e-56 220.3 123 83.7
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 4.0e-55 218.0 123 83.7
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 5.2e-55 217.6 122 83.6
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 5.2e-55 217.6 122 83.6
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 6.9e-55 217.2 123 83.7
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 6.9e-55 217.2 123 86.2
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 6.9e-55 217.2 123 82.9
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 1.5e-54 216.1 122 85.2
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 1.5e-54 216.1 122 82.8
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 3.4e-54 214.9 123 83.7
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 4.4e-54 214.5 123 81.3
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 4.4e-54 214.5 123 82.1
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 5.8e-54 214.2 123 80.5
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 7.6e-54 213.8 123 82.9
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 7.6e-54 213.8 122 84.4
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 9.9e-54 213.4 122 82.0
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 1.3e-53 213.0 116 85.3
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 1.7e-53 212.6 120 83.3
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 1.7e-53 212.6 123 80.5
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 2.2e-53 212.2 123 80.5
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 82.1
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 3.8e-53 211.5 122 80.3
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 6.4e-53 210.7 131 80.2
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 1.1e-52 209.9 123 82.1
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 1.9e-52 209.1 122 79.5
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 4.2e-52 208.0 123 79.7
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 5.4e-52 207.6 115 82.6
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 7.1e-52 207.2 115 82.6
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 9.3e-52 206.8 115 82.6
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 1.6e-51 206.1 115 82.6
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 1.6e-51 206.1 122 81.1
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 2.1e-51 205.7 120 80.8
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 2.1e-51 205.7 123 75.6
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.1e-51 205.7 123 78.9
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 7.8e-51 203.8 115 80.0
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 1.0e-50 203.4 115 80.9
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 2.3e-50 202.2 115 81.7
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 2.3e-50 202.2 123 77.2
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 2.3e-50 202.2 122 78.7
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 3.9e-50 201.4 115 80.9
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 3.9e-50 201.4 123 74.0
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 3.9e-50 201.4 121 78.5
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 3.9e-50 201.4 122 80.3
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 3.9e-50 201.4 122 80.3
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 5.1e-50 201.1 122 77.9
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 6.6e-50 200.7 122 78.7
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 3.3e-49 198.4 123 76.4
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 4.3e-49 198.0 122 77.0
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 5.6e-49 197.6 106 87.7
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 5.6e-49 197.6 101 92.1
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 7.3e-49 197.2 128 73.4
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 1.6e-48 196.1 120 75.0
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.1e-48 195.7 105 87.6
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.1e-48 195.7 118 78.8
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 2.8e-48 195.3 109 82.6
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 3.6e-48 194.9 106 86.8
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 3.6e-48 194.9 105 85.7
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 3.6e-48 194.9 120 74.2
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 4.8e-48 194.5 113 80.5
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 6.2e-48 194.1 106 86.8
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 8.1e-48 193.7 133 70.7
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.8e-47 192.6 106 85.8
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 1.8e-47 192.6 106 85.8
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 3.1e-47 191.8 118 75.4
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 6.9e-47 190.7 106 83.0
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 1.2e-46 189.9 106 84.0
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.0e-46 189.1 106 83.0
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 2.6e-46 188.7 104 82.7
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 5.8e-46 187.6 107 84.1
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 2.9e-45 185.3 105 81.9
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 4.9e-45 184.5 131 69.5
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 8.4e-45 183.7 105 81.9
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 1.6e-43 179.5 115 74.8
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 1.0e-42 176.8 98 80.6
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 1.0e-42 176.8 121 69.4
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.5e-41 172.9 98 78.6
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 2.5e-41 172.2 86 89.5
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 3.3e-41 171.8 98 79.6
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 4.3e-41 171.4 97 82.5
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 6.2e-40 167.5 120 70.8
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 2.0e-38 162.5 98 76.5
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 2.0e-38 162.5 98 76.5
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 2.0e-38 162.5 98 76.5
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 5.1e-34 147.9 107 68.2
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 6.2e-32 141.0 114 56.1
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 3.1e-31 138.7 66 93.9
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.9e-28 129.4 109 56.0
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 9.3e-28 127.1 95 64.2
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 1.2e-27 126.7 123 54.5
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 6.3e-24 114.4 65 78.5
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 3.2e-20 102.1 57 86.0
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 4.2e-20 101.7 68 76.5
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 3.6e-19 98.6 69 73.9
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 1.2e-14 83.6 65 60.0
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 2.0e-14 82.8 50 66.0
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 7.2e-12 74.3 40 72.5
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 5.1e-10 68.2 50 66.0


User provided reference genes

Program Settings