Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G013210 Cucumis sativus L. HOM05D007059 ORTHO05D009155 1.1e-118 429.9 205 100.0
MELO3C020030.2 Cucumis melo HOM05D007059 ORTHO05D009155 1.2e-83 313.5 160 93.8
ClCG11G001160 Citrullus lanatus HOM05D007059 ORTHO05D009155 3.3e-70 268.9 170 79.4
Sed0015909 Sechium edule HOM05D007059 ORTHO05D009155 3.6e-56 222.2 168 72.0
FvH4_4g36660 Fragaria vesca HOM05D007059 ORTHO05D009155 9.4e-41 171.0 173 53.2
FAN12G0665 Fragaria x ananassa HOM05D007059 ORTHO05D009155 9.4e-41 171.0 173 53.2
FAN07G2854 Fragaria x ananassa HOM05D007059 ORTHO05D009155 3.6e-40 169.1 173 53.2
Potri.010G169700 Populus trichocarpa HOM05D007059 ORTHO05D009155 1.8e-39 166.8 187 51.3
CiPaw.05G167400 Carya illinoinensis HOM05D007059 ORTHO05D009155 8.8e-39 164.5 179 51.4
GSVIVG01010187001 Vitis vinifera HOM05D007059 ORTHO05D009155 1.1e-38 164.1 176 49.4
Sabra10G0129500 Salix brachista HOM05D007059 ORTHO05D009155 2.6e-38 162.9 187 50.8
TWI77G0260 Tripterygium wilfordii HOM05D007059 ORTHO05D009155 4.4e-38 162.2 171 51.5
TAR629G1440 Trochodendron aralioides HOM05D007059 ORTHO05D009155 4.4e-38 162.2 187 48.1
RcHm_v2.0_Chr4g0446371 Rosa chinensis HOM05D007059 ORTHO05D009155 2.8e-37 159.5 173 51.4
Ciclev10033522m.g Citrus clementina HOM05D007059 ORTHO05D009155 3.7e-37 159.1 176 52.3
Atru.chr11.1222 Acer truncatum HOM05D007059 ORTHO05D009155 4.8e-37 158.7 179 52.0
Lj3A851T65 Lonicera japonica HOM05D007059 ORTHO05D009155 1.1e-36 157.5 176 49.4
Nn4g24915 Nelumbo nucifera HOM05D007059 ORTHO05D009155 1.8e-36 156.8 180 50.0
Dinv01917 Davidia involucrata HOM05D007059 ORTHO05D009155 2.4e-36 156.4 159 52.8
Cpa.g.sc298.2 Carica papaya HOM05D007059 ORTHO05D009155 9.1e-36 154.5 179 50.3
Prupe.1G344600 Prunus persica HOM05D007059 ORTHO05D009155 1.6e-35 153.7 181 51.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.0e-35 153.3 184 48.9
Thecc.02G295400 Theobroma cacao HOM05D007059 ORTHO05D009155 2.6e-35 152.9 183 50.3
CSS0038027 Camellia sinensis var. sinensis HOM05D007059 ORTHO05D009155 3.5e-35 152.5 177 48.6
Haze_11738 Corylus avellana HOM05D007059 ORTHO05D009155 1.7e-34 150.2 180 48.9
Psat7g174240 Pisum sativum HOM05D007059 ORTHO05D009155 2.2e-34 149.8 169 51.5
Manes.16G044801 Manihot esculenta HOM05D007059 ORTHO05D009155 3.8e-34 149.1 175 49.7
VMungo1127G1389 Vigna mungo HOM05D007059 ORTHO05D009155 2.5e-33 146.4 162 51.2
Ca_03042_v3 Cicer arietinum L. HOM05D007059 ORTHO05D009155 4.2e-33 145.6 171 49.7
Glyma.11G104100 Glycine max HOM05D007059 ORTHO05D009155 7.2e-33 144.8 166 51.2
MD16G1006000 Malus domestica HOM05D007059 ORTHO05D009155 9.4e-33 144.4 176 48.9
Glyma.12G029100 Glycine max HOM05D007059 ORTHO05D009155 2.1e-32 143.3 166 51.2
Actinidia38411 Actinidia chinensis HOM05D007059 ORTHO05D009155 8.0e-32 141.4 198 42.4
Peaxi162Scf01172g00004 Petunia axillaris HOM05D007059 ORTHO05D009155 8.0e-32 141.4 166 50.0
PGR031G0357 Punica granatum HOM05D007059 ORTHO05D009155 2.3e-31 139.8 161 48.4
vmacro08590 Vaccinium macrocarpon HOM05D007059 ORTHO05D009155 2.3e-31 139.8 177 47.5
Medtr4g074210 Medicago truncatula HOM05D007059 ORTHO05D009155 6.7e-31 138.3 169 45.6
Lalb_Chr01g0001591 Lupinus albus HOM05D007059 ORTHO05D009155 1.5e-30 137.1 171 45.6
Sc10g0008670 Simmondsia chinensis HOM05D007059 ORTHO05D009155 1.5e-30 137.1 178 44.9
arahy.Tifrunner.gnm1.ann1.NRJ0Q8 Arachis hypogaea HOM05D007059 ORTHO05D009155 2.0e-30 136.7 164 48.8
arahy.Tifrunner.gnm1.ann1.PC0HA4 Arachis hypogaea HOM05D007059 ORTHO05D009155 2.0e-30 136.7 164 48.8
COL.COLO4_16620 Corchorus olitorius HOM05D007059 ORTHO05D009155 2.0e-30 136.7 181 47.0
TPR.G21564 Trifolium pratense HOM05D007059 ORTHO05D009155 2.0e-30 136.7 140 55.0
Gohir.D01G138500 Gossypium hirsutum HOM05D007059 ORTHO05D009155 2.6e-30 136.3 182 46.7
Rhsim04G0168700 Rhododendron simsii HOM05D007059 ORTHO05D009155 2.6e-30 136.3 125 57.6
Gohir.A01G145900 Gossypium hirsutum HOM05D007059 ORTHO05D009155 3.3e-30 136.0 184 48.4
Gorai.002G167400 Gossypium raimondii HOM05D007059 ORTHO05D009155 4.4e-30 135.6 182 46.7
Solyc04g009370.4 Solanum lycopersicum HOM05D007059 ORTHO05D009155 9.7e-30 134.4 122 59.0
Sopen04g004490 Solanum pennellii HOM05D007059 ORTHO05D009155 9.7e-30 134.4 122 59.0
Phvul.011G032300 Phaseolus vulgaris HOM05D007059 ORTHO05D009155 1.3e-29 134.0 165 49.7
Eucgr.G02016 Eucalyptus grandis HOM05D007059 ORTHO05D009155 1.7e-29 133.7 179 45.3
Cc11_g00200 Coffea canephora HOM05D007059 ORTHO05D009155 2.2e-29 133.3 175 46.9
Nitab4.5_0007261g0020 Nicotiana tabacum HOM05D007059 ORTHO05D009155 2.8e-29 132.9 165 47.3
Migut.E00613 Erythranthe guttata HOM05D007059 ORTHO05D009155 8.2e-29 131.3 177 44.6
CAN.G624.23 Capsicum annuum HOM05D007059 ORTHO05D009155 1.1e-28 131.0 162 45.7
PGSC0003DMG400032539 Solanum tuberosum HOM05D007059 ORTHO05D009155 1.1e-28 131.0 121 57.9
PSO063G1277 Papaver somniferum HOM05D007059 ORTHO05D009155 5.3e-28 128.6 116 58.6
PSO782G1004 Papaver somniferum HOM05D007059 ORTHO05D009155 5.3e-28 128.6 116 58.6
Hund08500 Selenicereus undatus HOM05D007059 ORTHO05D009155 5.3e-28 128.6 181 43.6
Migut.E00704 Erythranthe guttata HOM05D007059 ORTHO05D009155 7.0e-28 128.3 122 56.6
Nitab4.5_0002113g0150 Nicotiana tabacum HOM05D007059 ORTHO05D009155 7.0e-28 128.3 165 46.7
Aqoxy3G04246 Aquilegia oxysepala HOM05D007059 ORTHO05D009155 9.1e-28 127.9 121 55.4
BcaC09g48947 Brassica carinata HOM05D007059 ORTHO05D009155 3.5e-27 125.9 122 54.1
C01p44250 Brassica napus HOM05D007059 ORTHO05D009155 3.5e-27 125.9 122 54.1
BolC1t04385H Brassica oleracea HOM05D007059 ORTHO05D009155 3.5e-27 125.9 122 54.1
Thhalv10021482m.g Eutrema salsugineum HOM05D007059 ORTHO05D009155 3.5e-27 125.9 176 43.8
Lj3g0001367 Lotus japonicus HOM05D007059 ORTHO05D009155 3.5e-27 125.9 116 57.8
AL3G33460 Arabidopsis lyrata HOM05D007059 ORTHO05D009155 4.5e-27 125.6 177 44.6
CARHR095430 Cardamine hirsuta HOM05D007059 ORTHO05D009155 4.5e-27 125.6 176 44.9
MBI06_g22349_MAGBIO Magnolia biondii HOM05D007059 ORTHO05D009155 7.7e-27 124.8 130 52.3
Sp3g17910 Schrenkiella parvula HOM05D007059 ORTHO05D009155 1.0e-26 124.4 176 43.8
ECA234G4546 Erigeron canadensis HOM05D007059 ORTHO05D009155 3.8e-26 122.5 99 63.6
AUR62012864 Chenopodium quinoa HOM05D007059 ORTHO05D009155 6.5e-26 121.7 178 42.7
Carub.0003s1980 Capsella rubella HOM05D007059 ORTHO05D009155 1.1e-25 120.9 176 43.2
EL10Ac9g22903 Beta vulgaris HOM05D007059 ORTHO05D009155 5.5e-25 118.6 101 56.4
Oeu027905.1 Olea europaea HOM05D007059 ORTHO05D009155 7.2e-25 118.2 87 70.1
AUR62017646 Chenopodium quinoa HOM05D007059 ORTHO05D009155 9.4e-25 117.9 101 59.4
AT3G19900 Arabidopsis thaliana HOM05D007059 ORTHO05D009155 1.6e-24 117.1 148 47.3
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.1e-24 116.7 115 53.9
unitig_27.g25281 Utricularia gibba HOM05D007059 ORTHO05D009155 3.6e-24 115.9 117 58.1
A01p34850 Brassica napus HOM05D007059 ORTHO05D009155 4.7e-24 115.5 122 51.6
BraA01t03568Z Brassica rapa HOM05D007059 ORTHO05D009155 4.7e-24 115.5 122 51.6
SGA_v2.0_scaffold88G27235 Striga asiatica HOM05D007059 ORTHO05D009155 8.0e-24 114.8 101 59.4
MSTRG.2053 Avicennia marina HOM05D007059 ORTHO05D009155 1.4e-23 114.0 112 56.2
Duzib251G0490 Durio zibethinus HOM05D007059 ORTHO05D009155 4.0e-23 112.5 146 47.3
Lsat_1_v5_gn_4_26421 Lactuca sativa HOM05D007059 ORTHO05D009155 4.0e-23 112.5 77 72.7
HanXRQChr01g0028541 Helianthus annuus HOM05D007059 ORTHO05D009155 5.2e-23 112.1 80 68.8
CANSAT35G1437 Cannabis sativa HOM05D007059 ORTHO05D009155 1.5e-22 110.5 75 73.3
Aa31LG8G6740 Aethionema arabicum HOM05D007059 ORTHO05D009155 2.0e-22 110.2 77 70.1
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 2.6e-22 109.8 73 74.0
ATR0124G031 Amborella trichopoda HOM05D007059 ORTHO05D009155 5.7e-22 108.6 77 68.8
HPP92_002491 Vanilla planifolia HOM05D007059 ORTHO05D009155 2.8e-21 106.3 105 53.3
HPP92_002544 Vanilla planifolia HOM05D007059 ORTHO05D009155 2.8e-21 106.3 105 53.3
Pp3c10_16080 Physcomitrium patens HOM05D007059 ORTHO05D009155 1.4e-20 104.0 189 38.6
SEGI_27177 Sequoiadendron giganteum HOM05D007059 ORTHO05D009155 2.0e-19 100.1 61 75.4
AagrBONN_evm.TU.Sc2ySwM_344.1288 Anthoceros agrestis HOM05D007059 ORTHO05D009155 2.7e-19 99.8 91 52.7
Mapoly0055s0010 Marchantia polymorpha HOM05D007059 ORTHO05D009155 3.5e-19 99.4 107 48.6
Pp3c2_14430 Physcomitrium patens HOM05D007059 ORTHO05D009155 7.7e-19 98.2 105 52.4
Zm00001eb259420 Zea mays HOM05D007059 ORTHO05D009155 1.0e-18 97.8 75 65.3
SMO114G0039 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 5.5e-17 92.0 74 60.8
CBR_g48375 Chara braunii HOM05D007059 ORTHO05D009155 1.7e-13 80.5 74 51.4
Actinidia13703 Actinidia chinensis HOM05D007059 ORTHO05D009155 1.8e-12 77.0 71 56.3
THA.LOC104801903 Tarenaya hassleriana HOM05D007059 ORTHO05D009155 9.2e-12 74.7 71 57.7


User provided reference genes

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