Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 2.6e-128 462.2 262 100.0
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 6.0e-125 451.1 262 95.8
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 8.2e-106 387.5 314 74.5
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 5.1e-92 341.7 247 80.6
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 1.1e-83 313.9 329 62.6
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 3.0e-68 262.7 206 69.9
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 1.5e-62 243.8 185 69.7
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 1.6e-61 240.4 191 68.6
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 4.7e-61 238.8 151 78.8
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 3.0e-60 236.1 276 51.8
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 4.0e-60 235.7 153 79.1
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 5.2e-60 235.3 183 67.8
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 5.2e-60 235.3 180 71.1
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 6.8e-60 235.0 182 68.7
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 2.0e-59 233.4 191 66.5
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 2.6e-59 233.0 187 69.0
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 3.4e-59 232.6 154 76.0
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 4.4e-59 232.3 191 64.9
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 5.7e-59 231.9 184 67.9
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 1.3e-58 230.7 183 68.9
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 1.3e-58 230.7 180 67.2
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 1.7e-58 230.3 183 64.5
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 2.2e-58 229.9 180 67.8
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 2.2e-58 229.9 203 60.6
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 2.8e-58 229.6 150 78.7
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 3.7e-58 229.2 151 77.5
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 6.3e-58 228.4 186 64.5
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 1.4e-57 227.3 183 65.6
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 2.4e-57 226.5 154 73.4
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 4.1e-57 225.7 188 65.4
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 5.4e-57 225.3 182 65.9
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 9.1e-57 224.6 210 59.0
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 2.0e-56 223.4 183 68.3
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 1.0e-55 221.1 194 63.4
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 1.0e-55 221.1 154 71.4
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 2.9e-55 219.5 154 70.1
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 2.9e-55 219.5 180 65.6
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 2.9e-55 219.5 181 63.0
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.8e-55 219.2 186 62.9
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 6.6e-55 218.4 180 66.1
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 1.1e-54 217.6 144 77.1
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 1.5e-54 217.2 186 62.4
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 2.5e-54 216.5 183 64.5
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 3.3e-54 216.1 183 61.7
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 5.5e-54 215.3 150 72.0
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 5.5e-54 215.3 150 72.0
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 5.5e-54 215.3 150 72.0
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 5.5e-54 215.3 150 72.0
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 5.5e-54 215.3 155 67.1
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 7.2e-54 214.9 183 61.7
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 7.2e-54 214.9 265 49.8
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 7.2e-54 214.9 187 62.6
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 7.2e-54 214.9 145 74.5
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 7.2e-54 214.9 182 63.2
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 9.5e-54 214.5 277 50.2
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 9.5e-54 214.5 277 50.2
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 1.6e-53 213.8 161 67.7
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 2.1e-53 213.4 150 71.3
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 2.8e-53 213.0 180 62.8
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 3.6e-53 212.6 181 62.4
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 4.7e-53 212.2 183 61.2
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 4.7e-53 212.2 181 64.1
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 4.7e-53 212.2 177 62.1
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 6.1e-53 211.8 132 80.3
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 6.1e-53 211.8 152 69.1
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 8.0e-53 211.5 187 61.5
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 1.0e-52 211.1 183 62.8
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.4e-52 210.7 193 61.7
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 1.4e-52 210.7 167 66.5
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 1.8e-52 210.3 186 62.4
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 1.8e-52 210.3 153 68.6
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.8e-52 210.3 183 60.1
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 2.3e-52 209.9 149 71.8
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.0e-52 209.5 186 59.7
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 3.0e-52 209.5 152 70.4
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 4.0e-52 209.1 177 61.6
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 5.2e-52 208.8 187 62.0
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 8.9e-52 208.0 183 61.7
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 1.2e-51 207.6 189 59.8
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 7.5e-51 204.9 134 75.4
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 2.2e-50 203.4 186 60.8
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 2.8e-50 203.0 134 75.4
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 3.7e-50 202.6 249 50.6
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 3.7e-50 202.6 249 50.6
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 4.9e-50 202.2 150 67.3
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 6.3e-50 201.8 183 59.6
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 6.3e-50 201.8 230 53.0
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.8e-49 200.3 131 77.9
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 3.2e-49 199.5 182 61.5
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 3.2e-49 199.5 182 61.5
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 4.1e-49 199.1 209 56.9
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 9.2e-49 198.0 164 65.2
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 9.2e-49 198.0 172 61.6
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 2.0e-48 196.8 169 61.5
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 4.5e-48 195.7 140 70.7
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 1.0e-47 194.5 170 59.4
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.7e-47 193.7 293 43.7
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.7e-47 193.7 142 70.4
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.9e-47 192.6 220 50.9
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 3.9e-47 192.6 187 58.8
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 5.0e-47 192.2 165 64.8
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 6.6e-47 191.8 138 71.7
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 8.6e-47 191.4 150 64.7
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 3.3e-46 189.5 151 64.2
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 1.2e-45 187.6 189 57.7
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.6e-45 187.2 156 64.1
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 1.6e-45 187.2 185 58.4
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.9e-44 181.4 158 62.7
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 8.9e-44 181.4 158 62.7
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 4.4e-43 179.1 186 55.4
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 1.7e-42 177.2 156 59.6
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 1.4e-41 174.1 159 57.9
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 3.2e-41 172.9 192 54.7
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 5.4e-41 172.2 183 54.1
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 7.0e-41 171.8 134 65.7
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 7.0e-41 171.8 182 54.4
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.2e-40 171.0 127 67.7
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 2.7e-40 169.9 136 66.9
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 3.5e-40 169.5 185 51.4
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 4.6e-40 169.1 151 59.6
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 3.9e-39 166.0 163 56.4
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 3.3e-38 162.9 215 46.5
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 6.2e-37 158.7 131 61.1
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 8.0e-37 158.3 131 64.1
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 3.1e-36 156.4 156 59.0
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 2.0e-35 153.7 296 40.2
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 1.1e-33 147.9 144 58.3
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 5.1e-31 139.0 151 51.0
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 3.3e-30 136.3 159 52.8
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.2e-29 134.4 100 72.0
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 1.4e-28 131.0 102 64.7
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 1.3e-26 124.4 132 48.5
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 3.2e-25 119.8 164 42.7
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 8.6e-23 111.7 89 64.0
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 4.7e-21 105.9 140 44.3
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 6.4e-18 95.5 117 42.7
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 3.5e-16 89.7 85 56.5
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 2.3e-15 87.0 133 36.1
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 6.6e-15 85.5 100 55.0
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 8.7e-15 85.1 180 36.7
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 6.2e-13 79.0 56 71.4
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 1.8e-12 77.4 140 36.4
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 1.2e-11 74.7 152 41.4
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 4.9e-10 69.3 179 30.7


User provided reference genes

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