Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 5.6e-133 477.6 243 100.0
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.4e-123 446.4 243 93.0
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 5.8e-106 387.9 235 81.7
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 5.1e-78 295.0 225 65.3
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 3.7e-76 288.9 228 60.5
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 4.0e-75 285.4 227 61.7
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 6.9e-75 284.6 222 63.5
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 3.4e-74 282.3 206 68.0
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 1.0e-73 280.8 222 62.2
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 1.3e-73 280.4 235 60.9
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 2.2e-73 279.6 222 62.2
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 2.9e-73 279.3 236 58.9
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 3.8e-73 278.9 227 59.9
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 6.5e-73 278.1 223 61.0
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 8.4e-73 277.7 233 61.4
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 7.1e-72 274.6 227 59.9
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 7.1e-72 274.6 198 65.7
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 7.1e-72 274.6 211 64.0
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.3e-70 270.4 222 60.4
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.3e-70 270.4 222 60.8
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.8e-70 270.0 200 67.5
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 8.7e-70 267.7 224 56.7
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 2.8e-68 262.7 227 55.1
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 3.7e-68 262.3 222 59.5
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 3.7e-68 262.3 222 59.5
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 4.8e-68 261.9 222 58.6
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 8.2e-68 261.2 226 58.8
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 4.1e-67 258.8 236 55.5
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 5.3e-67 258.5 200 63.5
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 6.9e-67 258.1 223 58.7
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 6.9e-67 258.1 228 57.0
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 3.4e-66 255.8 235 55.7
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 4.5e-66 255.4 220 59.1
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.0e-65 254.2 224 57.1
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 1.0e-65 254.2 231 56.3
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 2.9e-65 252.7 239 53.1
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 6.5e-65 251.5 225 58.2
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 6.5e-65 251.5 234 57.3
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 1.4e-64 250.4 224 57.1
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.9e-64 250.0 231 55.8
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 2.5e-64 249.6 207 61.8
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 7.2e-64 248.1 231 55.8
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 2.7e-63 246.1 231 57.1
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.0e-62 244.2 236 52.5
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 3.0e-62 242.7 224 56.2
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 8.8e-62 241.1 229 53.7
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 1.1e-61 240.7 234 52.6
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.3e-60 237.3 171 64.3
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 1.7e-60 236.9 183 65.0
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 1.7e-60 236.9 224 55.4
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 6.3e-60 235.0 232 54.7
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.8e-59 233.4 211 56.4
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 2.4e-59 233.0 225 54.2
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.5e-58 230.3 199 58.8
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 4.5e-58 228.8 208 55.8
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.0e-57 227.6 232 53.0
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 1.3e-57 227.3 225 51.6
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 1.8e-54 216.9 183 59.6
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.0e-54 216.1 183 57.9
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.0e-54 216.1 183 57.9
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 2.6e-53 213.0 236 50.4
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 1.1e-51 207.6 203 47.3
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.0e-49 201.1 205 51.2
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.5e-48 197.2 206 51.0
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 8.0e-47 191.4 153 58.8
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 4.4e-45 185.7 129 69.8
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.2e-42 177.6 144 66.0
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 6.5e-41 171.8 131 67.2
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.6e-39 167.2 134 59.7
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.7e-39 165.6 163 50.9
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.0e-38 164.5 235 40.0
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 6.8e-38 161.8 168 51.8
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 8.8e-38 161.4 240 39.2
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.0e-37 160.2 111 65.8
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 3.5e-34 149.4 227 42.3
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.5e-34 149.1 119 60.5
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.5e-34 149.1 119 60.5
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 7.2e-32 141.7 126 54.8
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.6e-31 140.6 134 53.7
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.6e-31 140.6 113 62.8
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.7e-31 139.8 128 57.0
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 2.3e-30 136.7 119 57.1
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 5.2e-30 135.6 125 56.8
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 6.8e-30 135.2 134 53.0
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 8.8e-30 134.8 113 58.4
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 3.7e-28 129.4 111 58.6
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 3.7e-28 129.4 106 61.3
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.6e-26 124.0 116 46.6
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 2.7e-26 123.2 119 52.9
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 4.5e-26 122.5 129 53.5
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.7e-23 112.5 96 60.4
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 4.4e-21 105.9 221 29.0
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.8e-20 103.2 87 59.8
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 1.8e-19 100.5 70 70.0
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.1e-19 99.4 63 71.4
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 2.9e-17 93.2 100 46.0
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 3.9e-17 92.8 74 59.5
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 5.0e-17 92.4 73 61.6
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 2.8e-15 86.7 184 28.3
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 4.7e-15 85.9 77 55.8
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.6e-13 80.1 101 40.6
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.4e-13 79.7 89 46.1
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 2.5e-08 63.5 80 41.2


User provided reference genes

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