Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G012620 Cucumis sativus L. HOM05D000723 ORTHO05D174787 3.8e-40 167.9 99 100.0
MELO3C022601.2 Cucumis melo HOM05D000723 ORTHO05D001626 1.4e-10 69.7 56 71.4
CsaV3_5G012820 Cucumis sativus L. HOM05D000723 ORTHO05D001626 2.4e-10 68.9 55 94.5
Sed0023494 Sechium edule HOM05D000723 ORTHO05D001626 1.2e-09 66.6 56 67.9
ClCG07G003080 Citrullus lanatus HOM05D000723 ORTHO05D001626 2.1e-09 65.9 56 67.9
MELO3C023835.2 Cucumis melo HOM05D000723 ORTHO05D001626 2.1e-09 65.9 56 67.9
MELO3C025474.2 Cucumis melo HOM05D000723 ORTHO05D001626 2.1e-09 65.9 56 67.9
CsaV3_5G006850 Cucumis sativus L. HOM05D000723 ORTHO05D001626 2.1e-09 65.9 56 67.9
CsaV3_5G026230 Cucumis sativus L. HOM05D000723 ORTHO05D001626 2.1e-09 65.9 56 67.9
Sed0001501 Sechium edule HOM05D000723 ORTHO05D001626 2.7e-09 65.5 56 66.1
Sed0011435 Sechium edule HOM05D000723 ORTHO05D001626 4.6e-09 64.7 56 66.1
ClCG11G000840 Citrullus lanatus HOM05D000723 ORTHO05D001626 6.0e-09 64.3 56 66.1
Sed0026872 Sechium edule HOM05D000723 ORTHO05D001626 7.8e-09 63.9 56 66.1
VMungo1080G1270 Vigna mungo HOM05D000723 ORTHO05D001626 1.7e-08 62.8 56 66.1
ClCG09G020220 Citrullus lanatus HOM05D000723 ORTHO05D001626 2.3e-08 62.4 54 66.7
Phvul.011G067600 Phaseolus vulgaris HOM05D000723 ORTHO05D001626 2.3e-08 62.4 56 64.3
Glyma.15G041500 Glycine max HOM05D000723 ORTHO05D001626 3.0e-08 62.0 56 66.1
Phvul.L002243 Phaseolus vulgaris HOM05D000723 ORTHO05D001626 6.6e-08 60.8 56 64.3
CANSAT54G2051 Cannabis sativa HOM05D000723 ORTHO05D001626 8.6e-08 60.5 56 60.7
Glyma.13G332700 Glycine max HOM05D000723 ORTHO05D001626 1.5e-07 59.7 56 62.5
Actinidia29208 Actinidia chinensis HOM05D000723 ORTHO05D001626 1.9e-07 59.3 55 61.8
CSS0006156 Camellia sinensis var. sinensis HOM05D000723 ORTHO05D001626 1.9e-07 59.3 57 61.4
CSS0032825 Camellia sinensis var. sinensis HOM05D000723 ORTHO05D001626 1.9e-07 59.3 57 61.4
Ca_19196_v3 Cicer arietinum L. HOM05D000723 ORTHO05D001626 2.5e-07 58.9 56 60.7
Ciclev10032980m.g Citrus clementina HOM05D000723 ORTHO05D001626 2.5e-07 58.9 56 60.7
Lj3g0006185 Lotus japonicus HOM05D000723 ORTHO05D001626 2.5e-07 58.9 56 62.5
Prupe.2G228900 Prunus persica HOM05D000723 ORTHO05D001626 3.3e-07 58.5 57 63.2
Cpa.g.sc1.344 Carica papaya HOM05D000723 ORTHO05D001626 4.3e-07 58.2 56 60.7
PGR142G0236 Punica granatum HOM05D000723 ORTHO05D001626 4.3e-07 58.2 57 63.2
Actinidia13859 Actinidia chinensis HOM05D000723 ORTHO05D001626 5.6e-07 57.8 55 60.0
Peaxi162Scf00039g00913 Petunia axillaris HOM05D000723 ORTHO05D001626 5.6e-07 57.8 56 60.7
CANSAT56G2241 Cannabis sativa HOM05D000723 ORTHO05D001626 7.3e-07 57.4 56 57.1
Cpa.g.sc252.20 Carica papaya HOM05D000723 ORTHO05D001626 9.5e-07 57.0 54 59.3
Oeu049196.1 Olea europaea HOM05D000723 ORTHO05D001626 9.5e-07 57.0 58 62.1
Sabra16G0141200 Salix brachista HOM05D000723 ORTHO05D001626 9.5e-07 57.0 55 56.4
Solyc09g005720.3 Solanum lycopersicum HOM05D000723 ORTHO05D001626 9.5e-07 57.0 56 58.9
Sopen09g001610 Solanum pennellii HOM05D000723 ORTHO05D001626 9.5e-07 57.0 56 58.9
Sopen10g035710 Solanum pennellii HOM05D000723 ORTHO05D001626 9.5e-07 57.0 135 37.0
PGSC0003DMG400019215 Solanum tuberosum HOM05D000723 ORTHO05D001626 9.5e-07 57.0 135 37.0
PGSC0003DMG400023925 Solanum tuberosum HOM05D000723 ORTHO05D001626 9.5e-07 57.0 56 58.9
FAN01G2903 Fragaria x ananassa HOM05D000723 ORTHO05D001626 1.2e-06 56.6 120 37.5
Manes.07G111000 Manihot esculenta HOM05D000723 ORTHO05D001626 1.2e-06 56.6 57 61.4
Medtr4g063060 Medicago truncatula HOM05D000723 ORTHO05D001626 1.2e-06 56.6 55 56.4
TWI31G1149 Tripterygium wilfordii HOM05D000723 ORTHO05D001626 1.2e-06 56.6 56 58.9
VMungo1127G1139 Vigna mungo HOM05D000723 ORTHO05D001626 1.2e-06 56.6 57 61.4
Actinidia02976 Actinidia chinensis HOM05D000723 ORTHO05D001626 1.6e-06 56.2 57 57.9
CiPaw.01G282300 Carya illinoinensis HOM05D000723 ORTHO05D001626 1.6e-06 56.2 57 61.4
Haze_17011 Corylus avellana HOM05D000723 ORTHO05D001626 1.6e-06 56.2 56 58.9
Peaxi162Scf00015g01919 Petunia axillaris HOM05D000723 ORTHO05D001626 1.6e-06 56.2 56 64.3
PGR119G2406 Punica granatum HOM05D000723 ORTHO05D001626 1.6e-06 56.2 57 61.4
RcHm_v2.0_Chr1g0365741 Rosa chinensis HOM05D000723 ORTHO05D001626 1.6e-06 56.2 56 62.5
TWI79G1708 Tripterygium wilfordii HOM05D000723 ORTHO05D001626 1.6e-06 56.2 56 58.9
ATR0661G337 Amborella trichopoda HOM05D000723 ORTHO05D001626 2.1e-06 55.8 57 59.6
Lalb_Chr19g0137661 Lupinus albus HOM05D000723 ORTHO05D001626 2.1e-06 55.8 57 61.4
CiPaw.13G099900 Carya illinoinensis HOM05D000723 ORTHO05D001626 2.8e-06 55.5 57 59.6
CiPaw.14G072800 Carya illinoinensis HOM05D000723 ORTHO05D001626 2.8e-06 55.5 57 59.6
Potri.009G027000 Populus trichocarpa HOM05D000723 ORTHO05D001626 2.8e-06 55.5 55 54.5
Solyc10g086330.2 Solanum lycopersicum HOM05D000723 ORTHO05D001626 2.8e-06 55.5 135 36.3
Manes.04G030100 Manihot esculenta HOM05D000723 ORTHO05D001626 3.6e-06 55.1 57 59.6
Sopen10g034050 Solanum pennellii HOM05D000723 ORTHO05D001626 3.6e-06 55.1 134 35.1
TWI75G1168 Tripterygium wilfordii HOM05D000723 ORTHO05D001626 3.6e-06 55.1 56 57.1
unitig_16.g32858 Utricularia gibba HOM05D000723 ORTHO05D001626 3.6e-06 55.1 58 60.3
unitig_8.g4094 Utricularia gibba HOM05D000723 ORTHO05D001626 3.6e-06 55.1 58 60.3
PGR044G0611 Punica granatum HOM05D000723 ORTHO05D001626 4.7e-06 54.7 56 58.9
Sc20g0004410 Simmondsia chinensis HOM05D000723 ORTHO05D001626 4.7e-06 54.7 58 60.3
Solyc10g084610.3 Solanum lycopersicum HOM05D000723 ORTHO05D001626 4.7e-06 54.7 135 36.3
Atru.chr12.542 Acer truncatum HOM05D000723 ORTHO05D001626 6.2e-06 54.3 56 60.7
arahy.Tifrunner.gnm1.ann1.004J0D Arachis hypogaea HOM05D000723 ORTHO05D001626 6.2e-06 54.3 51 62.7
arahy.Tifrunner.gnm1.ann1.4NAC8Z Arachis hypogaea HOM05D000723 ORTHO05D001760 6.2e-06 54.3 51 62.7
arahy.Tifrunner.gnm1.ann1.JFN0DY Arachis hypogaea HOM05D000723 ORTHO05D001626 6.2e-06 54.3 58 62.1
arahy.Tifrunner.gnm1.ann1.Y3PHS2 Arachis hypogaea HOM05D000723 ORTHO05D001626 6.2e-06 54.3 58 62.1
Dinv35649 Davidia involucrata HOM05D000723 ORTHO05D001626 6.2e-06 54.3 58 60.3
Nitab4.5_0000527g0070 Nicotiana tabacum HOM05D000723 ORTHO05D001626 6.2e-06 54.3 57 59.6
Atru.chr3.3812 Acer truncatum HOM05D000723 ORTHO05D001626 8.1e-06 53.9 56 62.5
arahy.Tifrunner.gnm1.ann1.G0VFWB Arachis hypogaea HOM05D000723 ORTHO05D001626 8.1e-06 53.9 57 61.4
arahy.Tifrunner.gnm1.ann1.ZH0CHD Arachis hypogaea HOM05D000723 ORTHO05D001626 8.1e-06 53.9 57 61.4
Glyma.12G066700 Glycine max HOM05D000723 ORTHO05D001626 8.1e-06 53.9 56 62.5
MD01G1121200 Malus domestica HOM05D000723 ORTHO05D001626 8.1e-06 53.9 57 57.9
Nitab4.5_0004238g0020 Nicotiana tabacum HOM05D000723 ORTHO05D001626 8.1e-06 53.9 57 59.6


User provided reference genes

Program Settings