Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 0.0e+00 1401.7 695 100.0
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 0.0e+00 1285.4 695 92.8
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 2.8e-302 1041.6 697 76.2
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 1.5e-244 849.7 705 61.1
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 4.2e-242 841.6 700 61.3
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 6.7e-232 807.7 708 57.1
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 2.9e-227 792.3 707 57.1
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 2.5e-226 789.3 706 56.9
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 3.6e-225 785.4 697 57.1
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.4e-224 783.5 727 55.3
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 2.3e-224 782.7 727 55.4
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.3e-224 782.7 704 57.2
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 5.1e-224 781.6 704 57.2
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 3.3e-223 778.9 706 56.4
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 2.8e-222 775.8 697 55.4
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 2.8e-222 775.8 697 55.8
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.4e-221 772.7 707 54.9
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 2.6e-220 769.2 687 57.4
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 7.7e-220 767.7 703 56.3
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 5.2e-216 755.0 704 55.7
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 5.2e-216 755.0 706 55.5
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 1.1e-215 753.8 707 55.2
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.0e-215 753.1 699 55.4
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 3.3e-215 752.3 706 55.1
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 6.5e-211 738.0 702 54.7
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 6.5e-211 738.0 692 54.2
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 3.2e-210 735.7 715 54.1
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 9.4e-210 734.2 704 54.5
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 6.1e-209 731.5 699 54.1
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 7.5e-207 724.5 709 53.2
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.3e-198 697.2 698 49.9
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 6.3e-198 694.9 762 49.2
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 4.1e-197 692.2 698 50.6
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 2.0e-196 689.9 701 50.4
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 4.5e-196 688.7 711 50.5
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.0e-195 687.6 713 50.5
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.0e-195 687.6 694 51.2
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.9e-195 686.0 659 54.0
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 8.6e-195 684.5 692 51.4
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 1.9e-194 683.3 610 58.7
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 1.2e-193 680.6 709 50.1
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 4.7e-193 678.7 697 48.9
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 6.8e-192 674.9 703 49.1
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 1.2e-191 674.1 711 49.8
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 5.7e-191 671.8 672 52.4
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 6.4e-190 668.3 703 48.8
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.2e-189 666.0 699 50.5
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 1.6e-188 663.7 692 49.3
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 2.0e-188 663.3 697 50.5
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 2.7e-188 662.9 703 49.5
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 4.6e-188 662.1 703 49.8
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 4.6e-188 662.1 705 48.8
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.3e-187 659.8 710 49.6
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 6.6e-187 658.3 706 49.3
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 9.5e-186 654.4 708 49.0
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 6.8e-184 648.3 706 48.0
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.0e-183 646.7 707 48.9
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 2.6e-183 646.4 588 56.6
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 1.7e-182 643.7 706 47.9
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 3.7e-182 642.5 703 48.1
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.6e-180 637.1 694 48.4
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 3.0e-179 632.9 712 46.5
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.6e-179 631.7 698 48.3
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 8.1e-177 624.8 676 49.0
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 6.8e-176 621.7 712 45.4
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 7.5e-175 618.2 508 60.6
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.1e-173 614.4 682 46.8
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 2.1e-172 610.1 734 45.4
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 3.0e-171 606.3 700 45.9
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 3.9e-171 605.9 684 45.8
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 2.0e-167 593.6 699 46.6
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 8.4e-166 588.2 510 56.5
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 6.6e-163 578.6 705 43.8
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.6e-161 573.9 599 50.3
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.5e-159 567.4 699 44.3
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 3.8e-158 562.8 460 60.4
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 4.9e-158 562.4 539 55.5
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 1.5e-151 540.8 607 49.8
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 2.1e-145 520.4 513 50.7
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.4e-144 517.7 448 58.5
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 6.9e-144 515.4 402 63.4
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 1.2e-143 514.6 447 58.8
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.7e-142 510.8 553 48.8
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 8.1e-137 491.9 622 44.4
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 4.9e-134 482.6 475 54.1
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 7.1e-133 478.8 530 49.8
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 9.6e-130 468.4 642 43.8
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.5e-127 461.1 444 54.7
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 1.9e-125 454.1 489 49.9
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 4.3e-122 443.0 435 54.7
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 5.9e-119 432.6 545 43.1
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.1e-104 385.2 664 36.6
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 1.8e-104 384.4 505 42.8
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.9e-101 374.4 373 50.4
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 9.8e-90 335.5 773 30.3
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 1.6e-87 328.2 844 28.9
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.7e-86 324.7 590 34.2
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.2e-82 312.0 698 31.8
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.2e-82 312.0 693 31.5
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.2e-82 312.0 693 31.5
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 8.6e-78 295.8 826 27.0
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.5e-77 294.3 235 60.9
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 5.9e-71 273.1 433 37.4
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 3.6e-60 237.3 207 56.0
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 1.3e-57 228.8 186 57.5
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.9e-53 214.9 319 39.5
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.1e-48 199.1 218 47.7
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 4.7e-44 183.7 160 51.2
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 1.1e-37 162.5 131 56.5
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 3.1e-35 154.5 146 56.8
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 5.8e-34 150.2 146 50.7
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-31 141.4 303 32.3
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 1.1e-27 129.4 204 36.3
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 1.5e-26 125.6 89 58.4
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 2.4e-24 118.2 238 36.6
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 7.1e-24 116.7 132 42.4
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 2.7e-23 114.8 188 37.8
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 2.5e-21 108.2 109 51.4
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 4.0e-19 100.9 246 29.3
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.1e-11 74.7 59 50.8
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 1.2e-10 72.8 61 47.5
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 1.0e-09 69.7 43 67.4
CAN.G1175.3 Capsicum annuum HOM05D002159 ORTHO05D005625 5.5e-08 63.9 391 20.7
PGR142G0288 Punica granatum HOM05D002159 ORTHO05D005625 5.5e-08 63.9 384 21.9
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.2e-07 62.8 46 69.6
Nitab4.5_0004439g0160 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.2e-07 62.8 436 20.6
Eucgr.K00275 Eucalyptus grandis HOM05D002159 ORTHO05D005625 2.1e-07 62.0 394 21.3
Duzib205G0713 Durio zibethinus HOM05D002159 ORTHO05D005625 3.6e-07 61.2 476 19.1
Nitab4.5_0000084g0030 Nicotiana tabacum HOM05D002159 ORTHO05D005625 3.6e-07 61.2 430 20.2
Peaxi162Scf00444g00532 Petunia axillaris HOM05D002159 ORTHO05D005625 1.3e-06 59.3 436 20.6
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 2.3e-06 58.5 67 47.8
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 2.3e-06 58.5 85 38.8
COL.COLO4_28056 Corchorus olitorius HOM05D002159 ORTHO05D005625 5.1e-06 57.4 472 18.9
Sp2g23400 Schrenkiella parvula HOM05D002159 ORTHO05D005625 5.1e-06 57.4 388 20.6
PSO423G0230 Papaver somniferum HOM05D002159 ORTHO05D005625 6.7e-06 57.0 281 23.1
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 8.7e-06 56.6 83 36.1


User provided reference genes

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