Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G011060 Cucumis sativus L. HOM05D000405 ORTHO05D000712 2.1e-107 392.5 213 100.0
MELO3C020162.2 Cucumis melo HOM05D000405 ORTHO05D000712 6.9e-79 297.7 190 88.9
ClCG07G005220 Citrullus lanatus HOM05D000405 ORTHO05D000712 6.5e-69 264.6 193 81.9
Sed0020568 Sechium edule HOM05D000405 ORTHO05D000712 8.2e-48 194.5 188 60.6
Sed0006445 Sechium edule HOM05D000405 ORTHO05D000712 1.1e-36 157.5 192 55.7
Lj8A53G91 Lonicera japonica HOM05D000405 ORTHO05D000712 1.6e-27 127.1 193 42.5
CiPaw.01G306900 Carya illinoinensis HOM05D000405 ORTHO05D000712 4.7e-27 125.6 232 40.5
CiPaw.02G199000 Carya illinoinensis HOM05D000405 ORTHO05D000712 1.0e-26 124.4 225 36.0
TWI73G1184 Tripterygium wilfordii HOM05D000405 ORTHO05D000712 2.3e-26 123.2 199 40.2
TAR369G0279 Trochodendron aralioides HOM05D000405 ORTHO05D000712 6.8e-26 121.7 221 36.2
Actinidia13642 Actinidia chinensis HOM05D000405 ORTHO05D000712 8.9e-26 121.3 191 42.4
Potri.013G090400 Populus trichocarpa HOM05D000405 ORTHO05D000712 2.0e-25 120.2 207 38.2
Thecc.10G184200 Theobroma cacao HOM05D000405 ORTHO05D000712 4.4e-25 119.0 220 35.9
Gohir.D04G011800 Gossypium hirsutum HOM05D000405 ORTHO05D000712 7.5e-25 118.2 201 37.8
Actinidia31632 Actinidia chinensis HOM05D000405 ORTHO05D000712 9.8e-25 117.9 178 42.1
GSVIVG01032662001 Vitis vinifera HOM05D000405 ORTHO05D000712 1.3e-24 117.5 213 36.6
ECA238G4392 Erigeron canadensis HOM05D000405 ORTHO05D000712 4.9e-24 115.5 197 35.5
Gorai.012G014000 Gossypium raimondii HOM05D000405 ORTHO05D000712 4.9e-24 115.5 201 37.3
TAR369G0933 Trochodendron aralioides HOM05D000405 ORTHO05D000712 6.4e-24 115.2 233 33.9
Nn2g10280 Nelumbo nucifera HOM05D000405 ORTHO05D000712 1.1e-23 114.4 210 39.0
Cfa001202 Carpinus fangiana HOM05D000405 ORTHO05D000712 3.2e-23 112.8 208 41.3
RcHm_v2.0_Chr1g0372431 Rosa chinensis HOM05D000405 ORTHO05D000712 5.4e-23 112.1 206 38.3
Gohir.A05G404100 Gossypium hirsutum HOM05D000405 ORTHO05D000712 9.2e-23 111.3 206 36.4
Haze_17364 Corylus avellana HOM05D000405 ORTHO05D000712 1.6e-22 110.5 210 39.0
Dinv21852 Davidia involucrata HOM05D000405 ORTHO05D000712 2.0e-22 110.2 212 35.4
Potri.019G059300 Populus trichocarpa HOM05D000405 ORTHO05D000712 2.0e-22 110.2 211 36.5
Duzib114G0822 Durio zibethinus HOM05D000405 ORTHO05D000712 2.7e-22 109.8 218 33.9
DCAR_020153 Daucus carota HOM05D000405 ORTHO05D000712 4.6e-22 109.0 194 37.6
Lsat_1_v5_gn_2_126380 Lactuca sativa HOM05D000405 ORTHO05D000712 4.6e-22 109.0 197 37.6
Manes.10G002100 Manihot esculenta HOM05D000405 ORTHO05D000712 1.3e-21 107.5 196 38.3
Prupe.2G264900 Prunus persica HOM05D000405 ORTHO05D000712 1.3e-21 107.5 213 33.8
QL08p065017 Quercus lobata HOM05D000405 ORTHO05D000712 1.3e-21 107.5 227 39.6
Nn5g26833 Nelumbo nucifera HOM05D000405 ORTHO05D000712 1.7e-21 107.1 196 35.2
TAR633G1594 Trochodendron aralioides HOM05D000405 ORTHO05D000712 1.7e-21 107.1 224 33.0
Eucgr.J00107 Eucalyptus grandis HOM05D000405 ORTHO05D000712 6.6e-21 105.1 222 39.6
Aqoxy1G01253 Aquilegia oxysepala HOM05D000405 ORTHO05D000712 8.6e-21 104.8 216 34.7
FAN03G2331 Fragaria x ananassa HOM05D000405 ORTHO05D000712 1.9e-20 103.6 207 35.3
Atru.chr12.203 Acer truncatum HOM05D000405 ORTHO05D000712 3.3e-20 102.8 211 36.0
Ciclev10033384m.g Citrus clementina HOM05D000405 ORTHO05D000712 4.3e-20 102.4 223 32.7
FAN01G0759 Fragaria x ananassa HOM05D000405 ORTHO05D000712 9.5e-20 101.3 207 35.7
Hma1.2p1_0264F.1_g106020 Hydrangea macrophylla HOM05D000405 ORTHO05D000712 9.5e-20 101.3 194 37.1
Cpa.g.sc19.45 Carica papaya HOM05D000405 ORTHO05D000712 1.2e-19 100.9 207 36.7
Oeu018744.1 Olea europaea HOM05D000405 ORTHO05D000712 1.2e-19 100.9 203 36.5
FAN10G1702 Fragaria x ananassa HOM05D000405 ORTHO05D000712 2.1e-19 100.1 207 35.7
HanXRQChr08g0216821 Helianthus annuus HOM05D000405 ORTHO05D000712 2.1e-19 100.1 196 35.7
Duzib106G0853 Durio zibethinus HOM05D000405 ORTHO05D000712 3.6e-19 99.4 241 35.7
Hma1.2p1_1805F.1_g303250 Hydrangea macrophylla HOM05D000405 ORTHO05D000712 3.6e-19 99.4 195 36.4
Manes.07G142500 Manihot esculenta HOM05D000405 ORTHO05D000712 8.0e-19 98.2 199 38.7
vmacro06899 Vaccinium macrocarpon HOM05D000405 ORTHO05D000712 8.0e-19 98.2 200 37.0
FAN06G2066 Fragaria x ananassa HOM05D000405 ORTHO05D000712 3.1e-18 96.3 208 35.6
FvH4_7g26020 Fragaria vesca HOM05D000405 ORTHO05D000712 5.2e-18 95.5 208 35.6
MSTRG.27257 Avicennia marina HOM05D000405 ORTHO05D000712 6.8e-18 95.1 193 33.7
MD07G1234600 Malus domestica HOM05D000405 ORTHO05D000712 1.5e-17 94.0 205 35.1
Sc10g0003030 Simmondsia chinensis HOM05D000405 ORTHO05D000712 2.0e-17 93.6 181 37.0
Migut.F00573 Erythranthe guttata HOM05D000405 ORTHO05D000712 2.6e-17 93.2 217 30.9
Nitab4.5_0003473g0030 Nicotiana tabacum HOM05D000405 ORTHO05D000712 5.8e-17 92.0 184 42.4
Oeu063994.1 Olea europaea HOM05D000405 ORTHO05D000712 9.8e-17 91.3 232 34.1
Glyma.06G142100 Glycine max HOM05D000405 ORTHO05D000712 1.3e-16 90.9 214 33.2
PSO170G5661 Papaver somniferum HOM05D000405 ORTHO05D000712 2.9e-16 89.7 247 30.0
MBI15_g39388_MAGBIO Magnolia biondii HOM05D000405 ORTHO05D000712 3.7e-16 89.4 228 33.8
MBI03_g09114_MAGBIO Magnolia biondii HOM05D000405 ORTHO05D000712 6.4e-16 88.6 224 33.0
PSO017G4219 Papaver somniferum HOM05D000405 ORTHO05D000712 1.1e-15 87.8 228 32.0
Oeu006063.1 Olea europaea HOM05D000405 ORTHO05D000712 1.4e-15 87.4 221 33.0
Sopen06g015190 Solanum pennellii HOM05D000405 ORTHO05D000712 1.9e-15 87.0 171 36.3
Lalb_Chr08g0239221 Lupinus albus HOM05D000405 ORTHO05D000712 3.2e-15 86.3 206 31.6
PGR044G0065 Punica granatum HOM05D000405 ORTHO05D000712 1.6e-14 84.0 214 30.8
Nitab4.5_0000171g0180 Nicotiana tabacum HOM05D000405 ORTHO05D000712 3.5e-14 82.8 174 40.8
VMungo1309G1479 Vigna mungo HOM05D000405 ORTHO05D000712 4.6e-14 82.4 210 32.4
CAN.G169.10 Capsicum annuum HOM05D000405 ORTHO05D000712 6.0e-14 82.0 49 73.5
Phvul.009G043200 Phaseolus vulgaris HOM05D000405 ORTHO05D000712 1.0e-13 81.3 207 32.9
SalBow3G2021 Salvia bowleyana HOM05D000405 ORTHO05D000712 1.3e-13 80.9 224 27.7
Solyc06g048870.3 Solanum lycopersicum HOM05D000405 ORTHO05D000712 1.3e-13 80.9 49 71.4
PGSC0003DMG400008776 Solanum tuberosum HOM05D000405 ORTHO05D000712 1.3e-13 80.9 53 67.9
Dinv34495 Davidia involucrata HOM05D000405 ORTHO05D000974 1.7e-13 80.5 54 68.5
Glyma.04G223200 Glycine max HOM05D000405 ORTHO05D000712 1.7e-13 80.5 209 31.6
AT2G40740 Arabidopsis thaliana HOM05D000405 ORTHO05D000712 3.9e-13 79.3 212 34.0
RhsimUnG0080500 Rhododendron simsii HOM05D000101 ORTHO05D002559 3.9e-13 79.3 46 71.7
RhsimUnG0083000 Rhododendron simsii HOM05D000405 ORTHO05D000712 1.1e-12 77.8 54 63.0
Rhsim11G0120500 Rhododendron simsii HOM05D000101 ORTHO05D002559 1.5e-12 77.4 43 69.8
Ca_05518_v3 Cicer arietinum L. HOM05D000405 ORTHO05D000712 5.6e-12 75.5 53 62.3
RcHm_v2.0_Chr5g0080371 Rosa chinensis HOM05D000092 ORTHO05D000042 5.6e-12 75.5 47 70.2
THA.LOC104824597 Tarenaya hassleriana HOM05D000405 ORTHO05D000712 5.6e-12 75.5 214 30.8
THA.LOC104814137 Tarenaya hassleriana HOM05D000405 ORTHO05D000712 7.3e-12 75.1 219 34.2
CANSAT56G3148 Cannabis sativa HOM05D000405 ORTHO05D000712 9.5e-12 74.7 217 28.1
LjContig00408g0018706 Lotus japonicus HOM05D000405 ORTHO05D000712 1.2e-11 74.3 54 61.1
AUR62030596 Chenopodium quinoa HOM05D000405 ORTHO05D000712 2.1e-11 73.6 179 38.5
Eucgr.G03144 Eucalyptus grandis HOM05D000405 ORTHO05D000712 2.8e-11 73.2 54 59.3
Peaxi162Scf00304g00620 Petunia axillaris HOM05D000405 ORTHO05D000712 2.8e-11 73.2 49 65.3
PGR142G0939 Punica granatum HOM05D000405 ORTHO05D000974 2.8e-11 73.2 201 28.4
TPR.G27043 Trifolium pratense HOM05D000405 ORTHO05D000712 2.8e-11 73.2 54 61.1
AUR62024943 Chenopodium quinoa HOM05D000405 ORTHO05D000712 4.7e-11 72.4 43 65.1
Medtr5g067680 Medicago truncatula HOM05D000405 ORTHO05D000712 8.1e-11 71.6 54 61.1
HPP92_001433 Vanilla planifolia HOM05D000405 ORTHO05D000712 8.1e-11 71.6 44 70.5
BcaB02g07656 Brassica carinata HOM05D000405 ORTHO05D000712 1.1e-10 71.2 187 31.0
Ah.12g064420 Amaranthus hybridus HOM05D000405 ORTHO05D000712 1.4e-10 70.9 148 33.8
Os05g0321900 Oryza sativa ssp. japonica HOM05D000405 ORTHO05D000712 1.4e-10 70.9 43 72.1
BcaB06g29171 Brassica carinata HOM05D000405 ORTHO05D000712 1.8e-10 70.5 201 31.8
CARHR135830 Cardamine hirsuta HOM05D000405 ORTHO05D000712 1.8e-10 70.5 211 29.9
Lalb_Chr10g0102811 Lupinus albus HOM05D000405 ORTHO05D000712 1.8e-10 70.5 54 59.3
Carub.0004s2302 Capsella rubella HOM05D000405 ORTHO05D000712 2.3e-10 70.1 55 60.0
EL10Ac2g02657 Beta vulgaris HOM05D000405 ORTHO05D000712 3.1e-10 69.7 40 67.5
Aa31LG10G11280 Aethionema arabicum HOM05D000405 ORTHO05D000712 4.0e-10 69.3 51 62.7
arahy.Tifrunner.gnm1.ann1.1JA0E6 Arachis hypogaea HOM05D000405 ORTHO05D000712 4.0e-10 69.3 47 61.7
arahy.Tifrunner.gnm1.ann1.G7PB2P Arachis hypogaea HOM05D000405 ORTHO05D000712 4.0e-10 69.3 47 61.7
MD01G1168500 Malus domestica HOM05D000405 ORTHO05D000974 5.2e-10 68.9 48 62.5
Peaxi162Scf00739g00429 Petunia axillaris HOM05D000405 ORTHO05D000712 6.8e-10 68.6 41 70.7
Psat2g063040 Pisum sativum HOM05D000405 ORTHO05D000712 6.8e-10 68.6 54 57.4
Hund13442 Selenicereus undatus HOM05D000405 ORTHO05D000712 8.9e-10 68.2 52 61.5
COL.COLO4_19463 Corchorus olitorius HOM05D000405 ORTHO05D000712 1.2e-09 67.8 44 63.6
AL4G38600 Arabidopsis lyrata HOM05D000405 ORTHO05D000712 1.5e-09 67.4 51 62.7
CSS0008438 Camellia sinensis var. sinensis HOM05D000405 ORTHO05D000712 2.0e-09 67.0 44 63.6
Thhalv10017926m.g Eutrema salsugineum HOM05D000405 ORTHO05D000712 2.0e-09 67.0 52 59.6
BcaC02g07332 Brassica carinata HOM05D000405 ORTHO05D000712 3.4e-09 66.2 210 31.0
A04p31110 Brassica napus HOM05D000405 ORTHO05D000712 4.4e-09 65.9 209 32.1
BraA04t18566Z Brassica rapa HOM05D000405 ORTHO05D000712 4.4e-09 65.9 209 32.1
Sp4g23050 Schrenkiella parvula HOM05D000405 ORTHO05D000712 4.4e-09 65.9 52 59.6
C03p27150 Brassica napus HOM05D000405 ORTHO05D000712 7.5e-09 65.1 212 27.4
BolC3t15096H Brassica oleracea HOM05D000405 ORTHO05D000712 7.5e-09 65.1 212 27.4
A03p22900 Brassica napus HOM05D000405 ORTHO05D000712 1.3e-08 64.3 55 56.4
BcaC01g05383 Brassica carinata HOM05D000405 ORTHO05D000712 1.7e-08 63.9 52 59.6
BraA03t11514Z Brassica rapa HOM05D000405 ORTHO05D000712 1.7e-08 63.9 212 27.4
BcaC08g44587 Brassica carinata HOM05D000405 ORTHO05D000712 2.2e-08 63.5 189 31.7
BolC4t28350H Brassica oleracea HOM05D000405 ORTHO05D000712 2.2e-08 63.5 205 31.2
BolC6t37240H Brassica oleracea HOM05D000405 ORTHO05D000712 2.2e-08 63.5 189 31.7
SEGI_34413 Sequoiadendron giganteum HOM05D000405 ORTHO05D000974 2.2e-08 63.5 184 29.3
A04p03330 Brassica napus HOM05D000405 ORTHO05D000712 2.9e-08 63.2 195 29.2
BraA04t16104Z Brassica rapa HOM05D000405 ORTHO05D000712 2.9e-08 63.2 195 29.2
BcaC02g07331 Brassica carinata HOM05D000405 ORTHO05D000712 4.9e-08 62.4 205 31.2
HanXRQChr14g0460661 Helianthus annuus HOM05D000405 ORTHO05D000974 8.3e-08 61.6 33 72.7
C06p20570 Brassica napus HOM05D000405 ORTHO05D000712 1.1e-07 61.2 189 31.2
C06p23500 Brassica napus HOM05D000405 ORTHO05D000712 1.1e-07 61.2 187 29.9
C04p68500 Brassica napus HOM05D000405 ORTHO05D000712 1.4e-07 60.8 205 30.2
Carub.0005s2317 Capsella rubella HOM05D000405 ORTHO05D000712 2.4e-07 60.1 188 29.8
Cc02_g05280 Coffea canephora HOM05D000405 ORTHO05D000712 2.4e-07 60.1 40 65.0
Zm00001eb285050 Zea mays HOM05D000405 ORTHO05D000712 2.4e-07 60.1 98 35.7
BcaB02g08370 Brassica carinata HOM05D000405 ORTHO05D000712 3.2e-07 59.7 47 61.7
TWI53G1824 Tripterygium wilfordii HOM05D000405 ORTHO05D000712 3.2e-07 59.7 129 37.2
BolC6t37524H Brassica oleracea HOM05D000405 ORTHO05D000712 4.1e-07 59.3 183 29.5
C04p36020 Brassica napus HOM05D000405 ORTHO05D000712 7.1e-07 58.5 47 57.4
BolC4t25195H Brassica oleracea HOM05D000405 ORTHO05D000712 7.1e-07 58.5 47 57.4
AagrBONN_evm.TU.Sc2ySwM_344.5207 Anthoceros agrestis HOM05D000405 ORTHO05D000974 9.2e-07 58.2 29 82.8
AL5G37720 Arabidopsis lyrata HOM05D000405 ORTHO05D000712 1.2e-06 57.8 194 27.3
BcaC02g09836 Brassica carinata HOM05D000405 ORTHO05D000712 3.5e-06 56.2 43 58.1
SEGI_21579 Sequoiadendron giganteum HOM05D000405 ORTHO05D000974 3.5e-06 56.2 45 55.6
SGA_v2.0_scaffold60G20884 Striga asiatica HOM05D000405 ORTHO05D000712 3.5e-06 56.2 40 60.0


User provided reference genes

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