Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G010830 Cucumis sativus L. HOM05D007229 ORTHO05D009131 8.1e-94 347.1 173 100.0
MELO3C020131.2 Cucumis melo HOM05D007229 ORTHO05D009131 1.7e-88 329.3 173 96.0
ClCG07G004950 Citrullus lanatus HOM05D007229 ORTHO05D009131 9.3e-82 307.0 177 90.4
Sed0026302 Sechium edule HOM05D007229 ORTHO05D009131 9.3e-74 280.4 177 81.9
Gohir.D04G011900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 5.1e-56 221.5 136 80.9
Gohir.A05G403900 Gossypium hirsutum HOM05D007229 ORTHO05D009131 6.7e-56 221.1 136 80.9
Duzib114G0482 Durio zibethinus HOM05D007229 ORTHO05D009131 1.1e-55 220.3 171 67.8
Gorai.012G014100 Gossypium raimondii HOM05D007229 ORTHO05D009131 1.9e-55 219.5 136 80.1
Glyma.04G221700 Glycine max HOM05D007229 ORTHO05D009131 7.4e-55 217.6 170 66.5
GSVIVG01032702001 Vitis vinifera HOM05D007229 ORTHO05D009131 2.8e-54 215.7 175 65.7
Cc02_g05510 Coffea canephora HOM05D007229 ORTHO05D009131 3.7e-54 215.3 173 65.9
Thecc.10G183800 Theobroma cacao HOM05D007229 ORTHO05D009131 3.7e-54 215.3 168 67.9
SalBow3G2298 Salvia bowleyana HOM05D007229 ORTHO05D009131 8.2e-54 214.2 146 76.0
Sopen06g015630 Solanum pennellii HOM05D007229 ORTHO05D009131 1.4e-53 213.4 140 75.7
Ciclev10033477m.g Citrus clementina HOM05D007229 ORTHO05D009131 2.4e-53 212.6 172 67.4
MSTRG.27273 Avicennia marina HOM05D007229 ORTHO05D009131 3.1e-53 212.2 145 74.5
Hund13463 Selenicereus undatus HOM05D007229 ORTHO05D009131 3.1e-53 212.2 145 75.2
Glyma.06G143700 Glycine max HOM05D007229 ORTHO05D009131 5.3e-53 211.5 171 64.9
CAN.G55.3 Capsicum annuum HOM05D007229 ORTHO05D009131 6.9e-53 211.1 122 84.4
Cpa.g.sc19.82 Carica papaya HOM05D007229 ORTHO05D009131 1.2e-52 210.3 170 65.9
Manes.10G004800 Manihot esculenta HOM05D007229 ORTHO05D009131 1.2e-52 210.3 164 69.5
Prupe.2G263300 Prunus persica HOM05D007229 ORTHO05D009131 1.2e-52 210.3 172 67.4
Solyc06g050170.4 Solanum lycopersicum HOM05D000154 ORTHO05D000092 1.2e-52 210.3 125 81.6
Lj1g0022940 Lotus japonicus HOM05D007229 ORTHO05D009131 1.5e-52 209.9 170 66.5
QL08p064765 Quercus lobata HOM05D007229 ORTHO05D009131 1.5e-52 209.9 168 63.7
Oeu020108.1 Olea europaea HOM05D007229 ORTHO05D009131 2.0e-52 209.5 135 78.5
Potri.019G056400 Populus trichocarpa HOM05D007229 ORTHO05D009131 2.0e-52 209.5 168 63.7
PGSC0003DMG400024310 Solanum tuberosum HOM05D007229 ORTHO05D009131 2.0e-52 209.5 142 75.4
Sc14g0005610 Simmondsia chinensis HOM05D007229 ORTHO05D009131 2.6e-52 209.1 149 72.5
TAR369G0442 Trochodendron aralioides HOM05D007229 ORTHO05D009131 3.4e-52 208.8 166 66.3
Haze_17350 Corylus avellana HOM05D000154 ORTHO05D000092 5.8e-52 208.0 169 65.1
FvH4_7g25840 Fragaria vesca HOM05D007229 ORTHO05D009131 7.6e-52 207.6 174 66.1
FAN06G3440 Fragaria x ananassa HOM05D007229 ORTHO05D009131 7.6e-52 207.6 174 66.1
MD07G1232800 Malus domestica HOM05D007229 ORTHO05D009131 1.0e-51 207.2 168 65.5
RcHm_v2.0_Chr1g0372111 Rosa chinensis HOM05D007229 ORTHO05D009131 1.3e-51 206.8 174 66.1
Manes.07G139500 Manihot esculenta HOM05D007229 ORTHO05D009131 1.7e-51 206.5 161 67.1
THA.LOC104824356 Tarenaya hassleriana HOM05D007229 ORTHO05D009131 1.7e-51 206.5 120 80.0
Actinidia00993 Actinidia chinensis HOM05D007229 ORTHO05D009131 2.2e-51 206.1 170 64.7
arahy.Tifrunner.gnm1.ann1.B9ILCP Arachis hypogaea HOM05D007229 ORTHO05D009131 2.2e-51 206.1 144 72.9
COL.COLO4_19452 Corchorus olitorius HOM05D007229 ORTHO05D009131 2.9e-51 205.7 144 74.3
Dinv26059 Davidia involucrata HOM05D007229 ORTHO05D009131 2.9e-51 205.7 173 65.3
Phvul.009G142501 Phaseolus vulgaris HOM05D007229 ORTHO05D009131 3.8e-51 205.3 168 63.7
arahy.Tifrunner.gnm1.ann1.I1HNZH Arachis hypogaea HOM05D007229 ORTHO05D009131 5.0e-51 204.9 168 63.1
CiPaw.01G306000 Carya illinoinensis HOM05D007229 ORTHO05D009131 5.0e-51 204.9 176 61.9
Hma1.2p1_2086F.1_g313730 Hydrangea macrophylla HOM05D007229 ORTHO05D009131 6.5e-51 204.5 136 74.3
PGR044G2361 Punica granatum HOM05D007229 ORTHO05D009131 6.5e-51 204.5 138 73.2
Carub.0005s2307 Capsella rubella HOM05D007229 ORTHO05D009131 1.1e-50 203.8 138 71.0
Thhalv10006268m.g Eutrema salsugineum HOM05D007229 ORTHO05D009131 1.4e-50 203.4 121 77.7
Lalb_Chr11g0067841 Lupinus albus HOM05D007229 ORTHO05D009131 1.4e-50 203.4 168 63.7
TWI53G0143 Tripterygium wilfordii HOM05D007229 ORTHO05D009131 1.4e-50 203.4 146 70.5
Sp5g06210 Schrenkiella parvula HOM05D007229 ORTHO05D009131 1.9e-50 203.0 166 62.0
VMungo1309G1820 Vigna mungo HOM05D007229 ORTHO05D009131 3.2e-50 202.2 170 64.7
HPP92_017919 Vanilla planifolia HOM05D007229 ORTHO05D009131 5.5e-50 201.4 143 68.5
DCAR_019811 Daucus carota HOM05D007229 ORTHO05D009131 7.1e-50 201.1 128 72.7
Sabra19G0072100 Salix brachista HOM05D007229 ORTHO05D009131 7.1e-50 201.1 166 64.5
BcaB01g00004 Brassica carinata HOM05D007229 ORTHO05D009131 9.3e-50 200.7 138 71.7
BcaB01g00005 Brassica carinata HOM05D007229 ORTHO05D009131 9.3e-50 200.7 138 71.7
CARHR166450 Cardamine hirsuta HOM05D007229 ORTHO05D009131 9.3e-50 200.7 166 61.4
Rhsim09G0184500 Rhododendron simsii HOM05D007229 ORTHO05D009131 9.3e-50 200.7 176 62.5
Aa31LG10G11190 Aethionema arabicum HOM05D007229 ORTHO05D009131 1.6e-49 199.9 123 77.2
Os01g0823600 Oryza sativa ssp. japonica HOM05D007229 ORTHO05D009131 1.6e-49 199.9 150 69.3
A09p49260 Brassica napus HOM05D007229 ORTHO05D009131 2.7e-49 199.1 135 70.4
C06p23470 Brassica napus HOM05D007229 ORTHO05D009131 2.7e-49 199.1 172 59.3
BraA09t40379Z Brassica rapa HOM05D007229 ORTHO05D009131 2.7e-49 199.1 135 70.4
Migut.F00594 Erythranthe guttata HOM05D007229 ORTHO05D009131 2.7e-49 199.1 121 77.7
Peaxi162Scf00739g00125 Petunia axillaris HOM05D000154 ORTHO05D000092 2.7e-49 199.1 150 68.0
BcaC08g44777 Brassica carinata HOM05D007229 ORTHO05D009131 3.5e-49 198.7 169 60.4
A07p22880 Brassica napus HOM05D007229 ORTHO05D009131 3.5e-49 198.7 169 60.4
BraA07t29954Z Brassica rapa HOM05D007229 ORTHO05D009131 3.5e-49 198.7 169 60.4
BcaC07g39946 Brassica carinata HOM05D007229 ORTHO05D009131 4.6e-49 198.4 138 68.8
C08p31620 Brassica napus HOM05D007229 ORTHO05D009131 4.6e-49 198.4 138 68.8
BolC8t50783H Brassica oleracea HOM05D007229 ORTHO05D009131 4.6e-49 198.4 138 68.8
SGA_v2.0_scaffold60G20901 Striga asiatica HOM05D007229 ORTHO05D009131 6.1e-49 198.0 144 68.8
BolC6t37520H Brassica oleracea HOM05D007229 ORTHO05D009131 1.0e-48 197.2 169 59.8
Lj1A965T45 Lonicera japonica HOM05D007229 ORTHO05D009131 1.3e-48 196.8 174 60.3
CDE12G0285 Ceratophyllum demersum HOM05D007229 ORTHO05D009131 1.8e-48 196.4 136 72.8
Lsat_1_v5_gn_8_13541 Lactuca sativa HOM05D007229 ORTHO05D009131 2.3e-48 196.1 171 62.6
Medtr3g094080 Medicago truncatula HOM05D007229 ORTHO05D009131 2.3e-48 196.1 143 68.5
ECA233G6234 Erigeron canadensis HOM05D007229 ORTHO05D009131 3.0e-48 195.7 141 68.1
MBI15_g35108_MAGBIO Magnolia biondii HOM05D007229 ORTHO05D009131 3.0e-48 195.7 136 73.5
Duzib106G0259 Durio zibethinus HOM05D007229 ORTHO05D009131 6.7e-48 194.5 153 68.6
Psat5g069080 Pisum sativum HOM05D007229 ORTHO05D009131 6.7e-48 194.5 166 60.8
AT3G56290 Arabidopsis thaliana HOM05D007229 ORTHO05D009131 8.7e-48 194.1 139 67.6
HanXRQChr08g0222581 Helianthus annuus HOM05D007229 ORTHO05D009131 8.7e-48 194.1 123 74.8
TPR.G16113 Trifolium pratense HOM05D007229 ORTHO05D009131 8.7e-48 194.1 143 67.8
PSO339G1638 Papaver somniferum HOM05D007229 ORTHO05D009131 3.3e-47 192.2 159 62.9
PSO384G2154 Papaver somniferum HOM05D007229 ORTHO05D009131 7.4e-47 191.0 137 70.8
AL5G37620 Arabidopsis lyrata HOM05D007229 ORTHO05D009131 9.7e-47 190.7 121 74.4
AUR62012362 Chenopodium quinoa HOM05D007229 ORTHO05D009131 4.8e-46 188.3 122 73.8
Aqoxy2G00722 Aquilegia oxysepala HOM05D007229 ORTHO05D009131 1.4e-45 186.8 133 70.7
EL10Ac2g04250 Beta vulgaris HOM05D007229 ORTHO05D009131 3.1e-45 185.7 169 60.9
BcaB02g07659 Brassica carinata HOM05D007229 ORTHO05D009131 4.1e-45 185.3 144 61.8
CSS0032880 Camellia sinensis var. sinensis HOM05D007229 ORTHO05D009131 5.9e-44 181.4 170 58.8
AUR62031491 Chenopodium quinoa HOM05D000154 ORTHO05D000092 7.7e-44 181.0 115 73.9
SEGI_31216 Sequoiadendron giganteum HOM05D007229 ORTHO05D009131 2.9e-43 179.1 145 62.1
Pp3c19_14460 Physcomitrium patens HOM05D007229 ORTHO05D009131 1.1e-42 177.2 171 56.1
Mapoly0032s0114 Marchantia polymorpha HOM05D007229 ORTHO05D009131 7.2e-42 174.5 171 55.0
ATR0681G125 Amborella trichopoda HOM05D007229 ORTHO05D009131 3.6e-41 172.2 110 78.2
Sed0009884 Sechium edule HOM05D007229 ORTHO05D009131 2.5e-39 166.0 160 60.6
SMO230G0076 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 5.7e-39 164.9 124 65.3
Nitab4.5_0000109g0540 Nicotiana tabacum HOM05D000154 ORTHO05D009131 5.3e-37 158.3 151 61.6
Nitab4.5_0003695g0030 Nicotiana tabacum HOM05D007229 ORTHO05D009131 2.0e-36 156.4 135 63.0
vmacro09972 Vaccinium macrocarpon HOM05D007229 ORTHO05D009131 2.0e-36 156.4 175 51.4
SMO230G0113 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 3.0e-32 142.5 100 70.0
SMO230G0102 Selaginella moellendorffii HOM05D007229 ORTHO05D009131 1.1e-31 140.6 115 63.5
MD01G1165900 Malus domestica HOM05D000154 ORTHO05D000092 1.3e-22 110.5 58 84.5
Ah.10g035980 Amaranthus hybridus HOM05D007229 ORTHO05D009131 1.7e-22 110.2 105 58.1
Nn2g10342 Nelumbo nucifera HOM05D000154 ORTHO05D000092 2.2e-22 109.8 68 75.0
SabraUnG0004000 Salix brachista HOM05D007229 ORTHO05D009131 5.3e-21 105.1 88 62.5
Zm00001eb149430 Zea mays HOM05D007229 ORTHO05D009131 7.7e-20 101.3 87 62.1
AagrBONN_evm.TU.Sc2ySwM_344.3614 Anthoceros agrestis HOM05D007229 ORTHO05D009131 6.5e-19 98.2 86 60.5
FAN01G1364 Fragaria x ananassa HOM05D007229 ORTHO05D009131 6.8e-16 88.2 106 52.8


User provided reference genes

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