Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.0e-113 411.4 199 100.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 7.3e-107 390.6 198 96.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 3.2e-94 348.6 199 84.9
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.8e-71 271.9 199 67.3
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.3e-59 232.3 198 57.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.8e-57 226.5 198 55.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 7.7e-56 221.1 198 55.1
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.8e-55 218.8 197 53.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 7.7e-32 141.4 203 41.4
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 4.0e-28 129.0 199 37.7
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.5e-27 127.1 199 35.2
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.4e-27 125.9 201 38.3
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 5.7e-27 125.2 201 38.3
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.2e-26 123.2 181 39.8
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.2e-26 123.2 201 37.8
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.3e-26 121.7 201 37.3
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 6.3e-26 121.7 200 37.5
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 1.8e-25 120.2 198 37.4
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 7.0e-25 118.2 244 32.4
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 9.2e-25 117.9 201 35.8
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.0e-24 116.7 205 36.6
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.7e-24 116.3 200 36.0
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.7e-24 116.3 193 36.8
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 3.5e-24 115.9 206 37.9
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 4.5e-24 115.5 199 35.2
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.5e-24 115.5 194 37.6
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 5.9e-24 115.2 201 36.3
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.3e-23 114.0 180 36.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.9e-23 112.8 186 38.2
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 2.9e-23 112.8 206 38.3
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 3.8e-23 112.5 200 36.0
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 5.0e-23 112.1 201 37.3
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 8.6e-23 111.3 201 37.3
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.1e-22 110.9 200 35.5
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.5e-22 110.5 201 33.8
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.5e-22 110.5 205 34.1
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.9e-22 110.2 204 34.8
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.9e-22 110.2 201 36.3
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.5e-22 109.8 199 34.2
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.3e-22 109.0 203 37.4
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 4.3e-22 109.0 201 38.8
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.6e-22 108.6 207 36.2
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 7.3e-22 108.2 204 35.3
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.3e-22 108.2 201 35.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 1.2e-21 107.5 201 34.8
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.2e-21 107.5 200 35.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.6e-21 107.1 199 32.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.6e-21 107.1 210 29.5
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 2.1e-21 106.7 205 34.1
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.1e-21 106.7 207 35.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 2.8e-21 106.3 203 36.9
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 3.6e-21 105.9 204 35.3
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 4.7e-21 105.5 200 35.0
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.7e-21 105.5 201 34.8
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.4e-20 104.0 204 33.3
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.8e-20 103.6 208 31.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 2.3e-20 103.2 203 34.0
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.3e-20 103.2 201 34.3
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 4.0e-20 102.4 201 36.3
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 4.0e-20 102.4 204 35.8
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 5.2e-20 102.1 203 34.5
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 6.8e-20 101.7 201 34.8
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 8.9e-20 101.3 204 32.8
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.2e-19 100.9 183 35.5
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 1.2e-19 100.9 205 32.2
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.0e-19 100.1 183 36.1
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.0e-19 100.1 218 32.6
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.6e-19 99.8 201 33.3
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.6e-19 99.8 205 31.7
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 2.6e-19 99.8 202 34.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 5.7e-19 98.6 204 31.9
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 1.3e-18 97.4 205 34.6
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.7e-18 97.1 205 30.7
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.7e-18 97.1 201 30.8
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 2.2e-18 96.7 199 31.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 3.7e-18 95.9 201 35.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 3.7e-18 95.9 200 32.0
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 6.4e-18 95.1 206 32.5
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.4e-18 95.1 205 31.2
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 6.4e-18 95.1 207 31.9
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.1e-17 94.4 204 32.4
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.2e-17 92.8 204 31.9
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 3.2e-17 92.8 204 31.4
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 5.4e-17 92.0 201 30.3
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.7e-16 89.7 204 30.9
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 5.9e-16 88.6 204 32.8
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 7.8e-16 88.2 137 35.0
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.1e-14 84.3 205 29.8
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.9e-14 83.6 179 33.5
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.5e-14 83.2 207 26.1
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-14 82.8 136 32.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.3e-14 81.6 205 29.3
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 9.5e-14 81.3 202 30.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-13 80.9 202 30.2
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.6e-13 79.3 205 29.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.6e-13 79.3 205 29.3
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 3.6e-13 79.3 204 27.9
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 6.2e-13 78.6 197 27.4
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.3e-12 76.6 212 28.3
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 8.9e-12 74.7 205 26.8
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.0e-11 73.6 212 27.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 6.4e-10 68.6 210 27.1
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.4e-09 67.4 120 36.7
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 9.2e-09 64.7 232 26.3
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.2e-08 64.3 207 23.7


User provided reference genes

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