Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.2e-278 960.7 466 100.0
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.9e-186 654.8 463 70.8
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.6e-184 649.8 464 70.9
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.0e-184 649.4 467 70.9
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.5e-182 643.3 477 67.9
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 7.5e-179 630.9 475 67.8
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 2.4e-177 625.9 467 66.8
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.2e-165 587.0 464 62.3
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.6e-149 533.5 465 58.1
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 8.1e-149 531.2 462 58.0
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.4e-148 530.4 458 57.4
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.8e-148 530.0 458 57.2
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.8e-148 530.0 458 57.2
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 3.1e-148 529.3 469 55.7
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.2e-147 527.3 465 56.3
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.2e-147 527.3 464 57.3
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.5e-147 526.9 469 55.9
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.5e-147 526.9 458 57.0
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.5e-147 526.9 459 58.6
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 2.0e-147 526.6 463 57.7
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 3.4e-147 525.8 466 57.5
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 3.4e-147 525.8 461 57.3
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 4.5e-147 525.4 471 57.1
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.6e-147 524.6 469 56.3
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 7.6e-147 524.6 469 56.9
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 9.9e-147 524.2 464 57.1
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.3e-146 523.9 457 57.1
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.7e-146 523.5 474 56.5
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.7e-146 523.5 473 57.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.2e-146 523.1 458 56.6
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 2.2e-146 523.1 464 57.1
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.2e-146 523.1 469 56.1
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.2e-146 523.1 469 56.1
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 3.8e-146 522.3 468 57.5
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.9e-146 521.9 474 56.5
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.4e-146 521.5 471 56.7
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.1e-145 520.8 466 56.0
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.1e-145 520.8 464 56.9
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 3.2e-145 519.2 464 56.0
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 4.2e-145 518.8 463 57.0
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 9.3e-145 517.7 447 57.5
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 9.3e-145 517.7 463 56.8
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.2e-144 517.3 465 57.0
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.2e-144 517.3 463 56.8
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.1e-144 516.5 469 57.1
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 2.1e-144 516.5 474 54.9
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.1e-144 516.5 468 56.4
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 3.5e-144 515.8 468 56.4
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 3.5e-144 515.8 461 56.6
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 4.6e-144 515.4 451 57.4
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.0e-143 514.2 461 56.6
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-143 513.5 468 56.2
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.8e-143 513.5 468 56.4
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 3.0e-143 512.7 435 58.9
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 5.1e-143 511.9 470 55.5
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 5.1e-143 511.9 456 56.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 5.1e-143 511.9 461 56.2
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 6.7e-143 511.5 460 55.7
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 8.7e-143 511.1 462 55.4
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 8.7e-143 511.1 473 55.4
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 8.7e-143 511.1 460 56.3
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.9e-142 510.0 464 55.6
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.5e-142 509.6 445 57.1
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 1.3e-141 507.3 471 55.6
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-141 507.3 468 55.8
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.6e-141 506.9 459 56.9
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.6e-141 506.9 465 55.9
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.1e-141 506.5 469 56.1
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 6.2e-141 505.0 457 56.7
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.4e-140 503.8 463 55.9
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.1e-140 502.7 461 55.7
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.1e-140 502.7 475 55.4
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 5.3e-140 501.9 471 54.1
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 9.0e-140 501.1 457 56.2
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.2e-139 500.7 465 55.5
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.2e-139 500.7 421 58.9
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 2.6e-139 499.6 478 55.0
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 2.6e-139 499.6 478 55.0
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 2.6e-139 499.6 478 55.0
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.6e-139 499.6 463 56.2
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.5e-139 498.8 483 53.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 5.8e-139 498.4 463 55.7
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.8e-139 498.4 483 53.2
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 1.0e-138 497.7 463 55.7
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.0e-138 497.7 462 54.1
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.3e-138 497.3 463 55.9
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 2.2e-138 496.5 463 55.3
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 2.2e-138 496.5 473 54.1
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.8e-138 495.7 495 52.5
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 3.8e-138 495.7 468 53.4
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.9e-138 495.4 472 53.8
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 6.5e-138 495.0 467 54.4
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 8.4e-138 494.6 461 55.1
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.1e-137 494.2 445 56.9
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.4e-137 493.8 471 54.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 1.9e-137 493.4 469 54.6
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.2e-137 492.7 437 57.2
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 4.2e-137 492.3 505 50.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 7.1e-137 491.5 456 53.9
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 2.1e-136 490.0 466 54.9
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 2.1e-136 490.0 463 55.5
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 2.7e-136 489.6 471 53.7
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.7e-136 489.6 465 55.3
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.3e-135 487.3 469 53.7
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.8e-135 486.9 471 53.5
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.8e-135 486.9 459 53.6
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 3.0e-135 486.1 469 53.9
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 3.3e-134 482.6 447 53.7
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 3.7e-133 479.2 472 52.3
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 4.1e-132 475.7 401 58.1
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 5.3e-132 475.3 466 53.6
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-131 474.2 408 57.6
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.5e-131 473.8 472 52.5
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.5e-131 473.8 487 53.0
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 2.0e-131 473.4 505 51.5
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 3.4e-131 472.6 448 53.3
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.0e-130 471.1 457 53.2
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 2.2e-130 469.9 464 52.8
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 8.4e-130 468.0 426 56.6
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.5e-129 466.5 559 45.8
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 7.2e-129 464.9 442 52.7
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.0e-127 461.1 454 53.3
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 9.7e-126 454.5 557 44.9
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.3e-125 454.1 406 55.2
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.3e-125 454.1 431 56.1
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.5e-123 447.2 444 52.7
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.0e-123 446.8 364 58.8
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.0e-123 446.8 364 58.8
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 5.0e-122 442.2 462 50.4
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.9e-120 434.9 468 50.0
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.8e-119 433.7 401 55.4
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.0e-119 433.0 438 53.4
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 6.7e-119 431.8 468 50.9
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.7e-119 431.8 606 42.1
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 3.2e-113 412.9 472 46.4
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.2e-113 412.9 439 47.2
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.5e-105 387.5 414 48.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.1e-104 383.6 465 46.7
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 8.0e-104 381.7 487 44.1
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 1.8e-103 380.6 446 45.7
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.0e-95 354.8 351 51.6
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 5.0e-90 335.9 516 39.0
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.6e-88 329.7 339 52.8
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.4e-79 301.2 311 48.6
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 8.9e-71 271.9 244 59.4
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.5e-70 268.9 202 65.8
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 3.7e-69 266.5 305 45.9
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.2e-60 236.9 190 58.4
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.7e-43 180.6 230 47.4
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.4e-36 158.3 307 35.2
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 4.5e-30 136.7 160 46.2
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.4e-28 131.0 90 70.0
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.5e-25 121.7 106 54.7
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 4.3e-25 120.2 89 64.0
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 5.6e-25 119.8 89 64.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 4.5e-22 110.2 110 51.8
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 3.2e-20 104.0 90 56.7
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 5.5e-20 103.2 99 51.5
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 5.1e-18 96.7 162 38.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.1e-18 96.7 131 42.7
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 6.7e-18 96.3 110 47.3
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 5.7e-17 93.2 67 61.2
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.1e-15 89.0 65 61.5
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.0e-13 82.4 63 60.3
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.2e-12 77.0 45 80.0
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.7e-10 69.7 101 43.6
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 2.2e-08 64.7 40 72.5


User provided reference genes

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