Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.5e-286 988.8 488 100.0
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.7e-256 887.5 464 92.7
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 3.6e-240 834.7 480 85.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 9.5e-217 756.9 453 80.6
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 3.5e-203 711.8 458 73.6
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 8.1e-200 700.7 461 74.4
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.2e-195 686.8 464 73.9
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.7e-189 666.4 446 70.9
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 8.4e-189 664.1 446 70.2
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 7.1e-188 661.0 471 67.3
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 6.7e-186 654.4 459 68.0
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.3e-185 652.1 456 67.8
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 9.6e-185 650.6 449 68.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 9.6e-185 650.6 478 64.9
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 3.7e-184 648.7 452 67.5
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.7e-184 648.7 477 67.9
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.4e-183 646.7 469 65.7
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.1e-183 645.6 475 66.1
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 4.0e-183 645.2 460 67.0
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 2.0e-182 642.9 452 67.3
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 2.0e-182 642.9 451 68.1
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 3.4e-182 642.1 455 67.5
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 3.4e-182 642.1 450 67.6
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 4.5e-182 641.7 455 67.3
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 5.8e-182 641.3 450 66.7
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 5.8e-182 641.3 447 67.3
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.8e-182 641.3 453 66.0
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.8e-182 641.3 453 66.0
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 7.6e-182 641.0 442 67.4
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 7.6e-182 641.0 453 68.0
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 7.6e-182 641.0 463 66.3
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.0e-181 640.6 451 67.6
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.0e-181 640.6 453 66.2
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.3e-181 640.2 443 69.3
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.7e-181 639.8 453 66.2
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 2.2e-181 639.4 454 66.1
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 2.9e-181 639.0 453 65.8
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 4.9e-181 638.3 450 66.7
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 4.9e-181 638.3 447 66.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 6.5e-181 637.9 453 65.8
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 1.4e-180 636.7 447 67.8
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.2e-180 635.6 457 66.5
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 9.3e-180 634.0 457 66.1
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.7e-179 632.5 458 65.1
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 2.7e-179 632.5 436 68.6
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.6e-179 631.7 468 65.6
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 4.6e-179 631.7 450 67.3
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 7.9e-179 630.9 460 65.7
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.0e-178 630.6 453 65.3
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.8e-178 629.8 451 66.7
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.8e-178 629.8 445 67.4
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.9e-178 628.6 454 66.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 3.9e-178 628.6 467 64.9
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.7e-178 627.9 454 65.4
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.7e-178 627.9 454 65.4
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 6.7e-178 627.9 443 66.4
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 6.7e-178 627.9 446 66.8
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.5e-177 626.7 449 65.9
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 2.5e-177 625.9 449 67.0
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 3.3e-177 625.5 451 65.6
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 3.3e-177 625.5 454 65.4
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.6e-177 624.0 452 64.6
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.6e-176 623.2 454 65.2
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.6e-176 623.2 468 63.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 2.1e-176 622.9 459 65.8
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.7e-176 622.1 454 65.0
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.3e-176 621.3 451 66.5
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 8.2e-176 620.9 456 64.5
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.4e-175 620.2 445 65.6
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 2.4e-175 619.4 488 62.1
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 2.4e-175 619.4 437 66.8
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 5.3e-175 618.2 454 64.8
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 6.9e-175 617.8 459 64.7
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 2.0e-174 616.3 459 64.5
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 2.6e-174 615.9 447 66.7
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 3.4e-174 615.5 449 64.4
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 5.9e-174 614.8 431 67.5
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 1.7e-173 613.2 457 65.0
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 2.9e-173 612.5 449 65.9
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 5.0e-173 611.7 463 63.7
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.9e-172 609.8 477 62.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 5.5e-172 608.2 453 64.5
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 7.2e-172 607.8 443 65.9
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.2e-171 607.1 477 62.5
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 2.7e-171 605.9 487 60.4
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.3e-170 603.6 453 64.0
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.3e-170 603.6 451 65.0
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 2.3e-170 602.8 453 63.6
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.3e-170 602.8 457 62.1
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.9e-170 602.1 453 63.8
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 6.7e-170 601.3 448 63.8
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.1e-169 600.5 453 63.1
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.1e-169 600.5 453 63.6
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.1e-169 600.5 451 65.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 4.3e-169 598.6 454 63.7
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 4.3e-169 598.6 408 70.6
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 5.7e-169 598.2 452 63.9
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 7.4e-169 597.8 445 64.0
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.4e-169 597.8 543 55.6
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 9.7e-169 597.4 452 63.9
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.6e-168 596.7 452 63.5
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.6e-168 596.7 452 63.5
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.6e-168 596.7 452 63.5
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.8e-168 595.9 411 68.9
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.1e-167 594.0 479 62.0
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.8e-167 593.2 453 62.9
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.8e-167 593.2 452 62.2
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 2.4e-167 592.8 453 62.5
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 9.0e-167 590.9 463 61.8
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 2.0e-166 589.7 448 62.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.4e-166 589.0 460 62.0
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 4.5e-166 588.6 483 60.9
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 7.7e-166 587.8 445 62.9
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 2.9e-165 585.9 406 68.0
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.8e-165 585.5 448 62.3
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.4e-164 583.6 461 61.0
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 2.5e-164 582.8 448 62.1
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.2e-164 582.0 456 61.8
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 4.2e-164 582.0 474 60.3
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.2e-163 580.5 541 55.1
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.9e-162 575.5 463 60.0
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 7.4e-161 571.2 409 67.7
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.7e-160 570.1 449 61.7
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 4.8e-160 568.5 446 61.0
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.4e-159 566.2 385 68.8
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.4e-159 566.2 385 68.8
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 5.3e-159 565.1 468 59.6
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 3.4e-158 562.4 446 60.5
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 5.5e-156 555.1 409 63.8
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.3e-154 549.7 608 49.3
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.5e-153 547.0 458 60.3
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 4.4e-153 545.4 426 61.5
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 3.5e-150 535.8 421 62.9
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 2.1e-147 526.6 428 60.5
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 2.7e-139 499.6 450 54.2
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.6e-134 483.8 441 51.7
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 3.5e-134 482.6 482 51.0
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.1e-127 461.1 380 60.8
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 9.2e-127 458.0 452 53.3
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 3.5e-126 456.1 437 51.5
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 7.7e-126 454.9 408 52.9
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.0e-122 443.0 317 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 3.1e-114 416.4 502 43.2
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.1e-108 397.9 311 62.4
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 4.9e-96 355.9 196 88.3
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.2e-91 341.3 262 65.3
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.2e-78 298.1 300 49.7
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 8.4e-72 275.4 188 67.6
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.4e-50 204.1 199 53.8
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.1e-46 191.0 159 58.5
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 4.4e-44 183.3 299 36.1
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.5e-40 169.5 86 93.0
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 9.4e-39 165.6 592 25.7
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 3.0e-37 160.6 100 74.0
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-35 155.2 151 55.6
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 4.8e-35 153.3 106 66.0
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 2.3e-29 134.4 109 59.6
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 3.7e-27 127.1 108 60.2
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 6.3e-27 126.3 108 60.2
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.5e-23 115.2 81 67.9
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 2.5e-23 114.4 99 52.5
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 9.8e-20 102.4 64 73.4
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 5.4e-18 96.7 68 60.3
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-17 95.1 110 52.7
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.5e-17 94.0 63 68.3
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 3.2e-15 87.4 122 48.4
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.7e-11 73.9 42 78.6
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 7.8e-09 66.2 47 61.7
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 2.9e-08 64.3 40 72.5
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 3.6e-06 57.4 59 54.2


User provided reference genes

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