Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 6.1e-130 467.6 256 100.0
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 6.3e-119 431.0 256 92.6
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 4.0e-97 358.6 247 83.4
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 5.5e-91 338.2 256 76.2
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 1.5e-56 223.8 260 56.2
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 4.4e-56 222.2 258 56.6
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 2.2e-55 219.9 261 56.7
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 2.2e-55 219.9 258 56.2
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 6.4e-55 218.4 261 56.3
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 3.2e-54 216.1 260 56.5
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 7.1e-54 214.9 261 54.0
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 9.2e-54 214.5 260 54.2
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.1e-53 213.4 247 55.9
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 6.0e-53 211.8 260 55.0
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 1.1e-51 207.6 257 55.6
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 7.3e-51 204.9 260 55.0
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 3.6e-50 202.6 242 55.0
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.1e-49 201.1 261 53.3
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 1.1e-49 201.1 261 52.5
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 2.4e-49 199.9 257 53.3
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.4e-49 199.9 256 48.8
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 9.0e-49 198.0 259 51.4
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 2.6e-48 196.4 261 52.5
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 5.8e-48 195.3 265 52.8
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 7.6e-48 194.9 258 50.4
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 7.6e-48 194.9 256 51.2
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.2e-47 193.4 201 56.2
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 2.2e-47 193.4 256 53.5
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 2.2e-47 193.4 261 51.7
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 2.2e-47 193.4 256 50.8
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 3.8e-47 192.6 196 57.7
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 4.9e-47 192.2 256 52.3
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 1.1e-46 191.0 264 51.1
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 1.9e-46 190.3 263 54.4
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.9e-46 190.3 263 54.4
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 3.2e-46 189.5 263 52.1
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 7.1e-46 188.3 263 54.0
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 1.6e-45 187.2 267 49.8
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 1.6e-45 187.2 258 50.4
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 2.7e-45 186.4 198 54.5
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 6.0e-45 185.3 249 54.2
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 6.0e-45 185.3 256 51.2
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 7.8e-45 184.9 261 50.2
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 1.0e-44 184.5 255 52.2
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 1.0e-44 184.5 261 50.6
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.7e-44 183.7 261 52.9
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 3.0e-44 183.0 261 51.3
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 3.0e-44 183.0 266 50.8
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 5.1e-44 182.2 266 51.9
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 6.6e-44 181.8 263 51.7
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.5e-43 180.6 198 54.5
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 1.5e-43 180.6 257 49.4
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 2.5e-43 179.9 260 50.8
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 3.3e-43 179.5 258 50.0
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 1.3e-42 177.6 235 51.1
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 1.6e-42 177.2 261 49.8
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 1.6e-42 177.2 263 48.7
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 3.6e-42 176.0 240 47.9
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 1.4e-41 174.1 139 71.9
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 1.8e-41 173.7 163 64.4
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 5.3e-41 172.2 261 47.5
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 6.4e-39 165.2 263 48.3
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 2.4e-38 163.3 117 70.1
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 5.4e-38 162.2 152 59.2
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 9.3e-38 161.4 105 79.0
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 9.3e-38 161.4 105 79.0
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 1.2e-37 161.0 146 64.4
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 3.5e-37 159.5 214 50.0
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 3.5e-37 159.5 259 44.8
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 1.8e-36 157.1 146 61.6
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 3.0e-36 156.4 160 61.2
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 6.7e-36 155.2 142 64.8
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 7.4e-35 151.8 267 44.9
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 7.4e-35 151.8 139 63.3
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 3.7e-34 149.4 258 39.1
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 1.8e-33 147.1 265 45.7
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 9.0e-33 144.8 142 61.3
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 2.0e-32 143.7 147 59.9
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 2.6e-32 143.3 130 61.5
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 2.6e-32 143.3 130 61.5
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 3.4e-32 142.9 130 61.5
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 1.7e-31 140.6 156 56.4
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 2.2e-31 140.2 133 61.7
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 2.9e-31 139.8 156 55.8
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 2.9e-31 139.8 114 65.8
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 2.9e-31 139.8 114 65.8
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 2.9e-31 139.8 114 65.8
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 2.9e-31 139.8 114 65.8
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 3.8e-31 139.4 155 56.8
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 1.4e-30 137.5 148 56.8
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 1.9e-30 137.1 159 53.5
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 3.2e-30 136.3 229 49.3
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 5.5e-30 135.6 154 53.2
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 1.6e-29 134.0 152 53.3
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 3.5e-29 132.9 187 49.2
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 4.6e-29 132.5 161 51.6
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 4.6e-29 132.5 179 50.3
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 3.0e-28 129.8 179 49.7
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 1.1e-27 127.9 166 50.0
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 1.1e-27 127.9 240 39.6
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 7.4e-27 125.2 161 52.2
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 1.3e-26 124.4 201 42.8
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 8.2e-26 121.7 135 54.8
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 1.4e-25 120.9 170 52.4
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 2.5e-22 110.2 83 66.3
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.9e-19 100.5 271 33.2
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 4.1e-17 92.8 118 44.9
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 3.2e-14 83.2 258 33.7
Lsat_1_v5_gn_7_113640 Lactuca sativa HOM05D007823 ORTHO05D000174 5.0e-07 59.3 63 52.4
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 1.4e-06 57.8 131 36.6


User provided reference genes

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