Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 6.4e-134 480.7 235 100.0
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.7e-110 402.9 240 86.2
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.3e-99 366.7 225 82.7
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 2.5e-90 335.9 213 79.8
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.3e-83 312.8 226 68.6
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.1e-80 303.9 230 67.4
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.4e-80 302.8 207 72.0
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.5e-79 300.1 216 69.9
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.5e-79 300.1 216 69.9
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.6e-79 299.3 216 69.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.6e-79 299.3 216 69.4
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.6e-79 299.3 219 67.6
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.6e-79 297.7 216 69.4
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.0e-78 297.4 221 66.5
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.0e-78 297.4 241 63.5
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.3e-78 297.0 216 69.4
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.9e-78 295.8 191 72.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.9e-78 295.8 191 72.8
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 3.8e-78 295.4 191 72.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 8.4e-78 294.3 191 71.7
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 8.4e-78 294.3 225 67.1
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-77 293.9 219 66.2
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.4e-77 293.5 229 65.9
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.4e-77 293.5 206 68.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.9e-77 293.1 230 64.8
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.9e-77 293.1 220 67.3
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.5e-77 291.6 213 69.0
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 9.3e-77 290.8 220 66.4
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.2e-76 290.4 191 71.7
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.1e-76 289.7 215 67.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.1e-76 289.7 215 67.4
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 2.1e-76 289.7 208 68.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.5e-76 288.9 193 71.5
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.5e-76 288.9 192 72.9
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 6.0e-76 288.1 233 63.5
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.9e-76 287.7 205 67.3
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 7.9e-76 287.7 213 66.2
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.8e-75 286.6 192 71.4
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.8e-75 286.6 219 65.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 3.0e-75 285.8 192 70.8
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.0e-75 285.8 191 70.2
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 3.0e-75 285.8 207 66.7
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 3.9e-75 285.4 210 68.1
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.1e-75 285.0 219 64.8
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 6.7e-75 284.6 204 67.2
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.1e-74 283.9 193 70.5
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.9e-74 283.1 191 70.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 5.7e-74 281.6 213 67.1
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 5.7e-74 281.6 236 61.0
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 7.4e-74 281.2 198 69.2
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 9.6e-74 280.8 214 65.4
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.3e-73 280.4 204 66.2
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.6e-73 280.0 190 70.5
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.6e-73 280.0 213 64.3
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 2.1e-73 279.6 191 70.2
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 3.7e-73 278.9 221 63.8
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.8e-73 278.5 222 63.5
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.8e-73 278.5 222 63.5
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 4.8e-73 278.5 191 69.1
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 6.3e-73 278.1 231 59.3
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 6.3e-73 278.1 211 64.9
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.1e-72 277.3 210 65.7
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.4e-72 276.9 222 63.1
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 5.3e-72 275.0 231 60.6
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 9.0e-72 274.2 208 65.4
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.2e-71 273.9 196 67.9
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.0e-71 273.1 214 64.0
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 3.4e-71 272.3 190 70.0
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 4.5e-71 271.9 220 64.1
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 5.9e-71 271.6 193 67.4
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 5.9e-71 271.6 212 63.2
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.3e-70 270.4 205 64.9
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 1.7e-70 270.0 215 63.7
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 1.7e-70 270.0 215 63.7
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.2e-70 269.6 207 64.3
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 2.2e-70 269.6 188 69.1
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 3.8e-70 268.9 192 67.7
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.8e-70 268.9 191 68.1
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 5.0e-70 268.5 223 62.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.0e-70 268.5 226 60.6
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.0e-70 268.5 212 63.7
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 6.5e-70 268.1 195 65.6
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 6.5e-70 268.1 200 66.0
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.4e-69 266.9 192 66.7
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.9e-69 266.5 191 67.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.5e-69 266.2 209 62.7
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 3.2e-69 265.8 194 66.5
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 5.5e-69 265.0 191 66.5
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.6e-68 263.5 193 64.2
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.1e-68 263.1 192 65.6
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 6.1e-68 261.5 220 60.5
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.9e-67 258.8 210 61.4
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 6.7e-67 258.1 210 61.0
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.5e-66 256.1 195 65.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.3e-66 255.8 204 63.2
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.3e-65 253.8 195 64.6
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.6e-65 253.4 194 65.5
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.2e-65 253.1 185 65.4
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.8e-65 252.7 194 64.9
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.8e-65 252.7 194 64.9
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.8e-65 252.7 194 64.9
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 8.2e-65 251.1 193 66.8
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-64 250.4 194 64.9
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.4e-64 250.4 207 62.8
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.8e-64 250.0 194 63.9
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.1e-64 249.2 206 59.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 5.3e-64 248.4 194 63.9
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 9.0e-64 247.7 188 62.8
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.2e-63 247.3 194 63.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.2e-63 247.3 194 63.9
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-63 247.3 188 62.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.0e-63 246.5 194 63.4
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.6e-63 246.1 194 63.4
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.5e-63 245.4 194 63.4
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 7.7e-63 244.6 194 63.9
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.0e-62 244.2 215 57.2
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.2e-62 243.0 214 58.9
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.9e-62 242.7 194 61.9
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 6.5e-62 241.5 200 61.5
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 7.2e-61 238.0 226 56.2
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 9.4e-61 237.7 228 56.6
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.8e-59 231.1 191 61.3
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 2.0e-58 229.9 193 61.1
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.1e-56 222.6 210 53.8
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 5.5e-53 211.8 218 55.0
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.6e-52 210.3 165 63.6
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 4.7e-52 208.8 164 64.0
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.3e-51 206.5 150 66.7
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 3.0e-51 206.1 216 53.7
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 9.1e-48 194.5 166 60.2
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 5.7e-42 175.3 214 46.3
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 7.5e-42 174.9 112 71.4
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 4.1e-40 169.1 128 61.7
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 6.5e-38 161.8 191 49.2
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 3.6e-36 156.0 131 61.8
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 4.7e-36 155.6 102 69.6
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.3e-33 147.5 109 65.1
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 7.7e-31 138.3 109 59.6
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.4e-16 90.9 62 66.1
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 6.2e-12 75.5 51 62.7
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 2.3e-06 57.0 150 27.3


User provided reference genes

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