Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 4.1e-204 714.5 366 100.0
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 9.4e-185 650.2 366 88.8
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 3.5e-163 578.6 366 80.1
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 8.9e-143 510.8 299 89.0
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 6.2e-120 434.9 361 62.6
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 2.9e-117 426.0 363 62.0
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 4.6e-115 418.7 361 59.8
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 6.0e-115 418.3 365 59.2
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 1.1e-113 414.1 363 60.9
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.6e-112 410.2 365 59.7
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.8e-111 406.8 369 59.3
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 4.0e-111 405.6 363 59.0
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 1.0e-109 401.0 362 56.1
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 2.2e-109 399.8 361 57.1
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 2.2e-109 399.8 361 55.4
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 6.5e-109 398.3 370 55.4
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 1.4e-108 397.1 356 59.3
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 5.5e-108 395.2 361 54.3
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 2.1e-107 393.3 360 58.1
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 3.5e-107 392.5 355 57.2
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 4.6e-107 392.1 366 56.3
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 6.0e-107 391.7 346 60.1
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 1.0e-106 391.0 356 58.1
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.8e-106 390.2 362 57.7
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 2.3e-106 389.8 362 55.2
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 3.0e-106 389.4 360 56.7
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 1.1e-105 387.5 357 56.6
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 1.9e-105 386.7 367 56.4
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 4.3e-105 385.6 331 58.3
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 5.7e-105 385.2 361 56.5
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 7.4e-105 384.8 360 57.8
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 2.4e-103 379.8 379 54.1
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 3.1e-103 379.4 347 56.2
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 5.3e-103 378.6 366 55.5
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 6.9e-103 378.3 366 52.5
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 2.0e-102 376.7 360 56.7
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 3.4e-102 375.9 336 58.6
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 3.8e-101 372.5 362 54.1
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 1.1e-100 370.9 363 54.3
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 1.1e-100 370.9 360 54.7
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.4e-100 370.5 360 53.3
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 1.4e-100 370.5 336 56.5
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 1.9e-100 370.2 363 53.2
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 5.5e-100 368.6 370 52.4
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 7.2e-100 368.2 361 53.2
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 1.6e-99 367.1 363 50.4
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 4.6e-99 365.5 337 57.6
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 6.1e-99 365.2 349 55.6
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 1.3e-98 364.0 364 53.0
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 5.1e-98 362.1 369 52.6
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 4.3e-97 359.0 366 51.4
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 7.4e-97 358.2 361 52.6
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 1.3e-96 357.5 363 49.6
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 2.4e-95 353.2 371 51.5
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 3.1e-95 352.8 359 52.9
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 6.9e-95 351.7 348 52.9
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 9.0e-95 351.3 371 50.4
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 5.0e-93 345.5 372 52.7
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 6.5e-93 345.1 317 59.3
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 8.5e-93 344.7 368 52.2
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 3.2e-92 342.8 371 51.2
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 1.8e-90 337.0 363 50.1
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 2.3e-90 336.7 364 53.0
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 3.9e-90 335.9 360 48.9
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 1.5e-89 334.0 304 59.5
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 2.6e-89 333.2 365 51.5
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 1.3e-88 330.9 365 51.2
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 1.7e-88 330.5 365 50.7
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 1.7e-88 330.5 302 57.3
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 3.1e-87 326.2 365 51.0
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 5.3e-87 325.5 371 50.7
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 6.9e-87 325.1 387 48.6
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 4.2e-84 315.8 351 51.9
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.2e-83 314.3 369 47.7
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 3.6e-83 312.8 351 51.0
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.1e-79 301.2 322 50.9
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 1.8e-79 300.4 339 47.8
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 1.3e-77 294.3 351 45.9
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 5.0e-77 292.4 270 57.4
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 1.9e-76 290.4 274 57.7
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 3.2e-76 289.7 273 58.2
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 3.2e-76 289.7 343 46.4
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 5.5e-76 288.9 258 57.4
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 9.4e-76 288.1 273 55.7
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 1.6e-75 287.3 336 46.4
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 4.7e-75 285.8 368 46.7
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 1.0e-74 284.6 287 56.8
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 1.4e-74 284.3 277 57.8
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 2.3e-74 283.5 289 54.3
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 1.2e-73 281.2 276 53.3
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 2.0e-70 270.4 230 64.8
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 1.2e-67 261.2 359 44.3
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 5.7e-65 252.3 282 51.4
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 1.6e-62 244.2 275 51.6
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 9.8e-57 224.9 335 41.5
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 1.2e-51 208.0 368 37.0
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 1.4e-50 204.5 376 36.2
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 3.4e-49 199.9 171 60.2
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 7.5e-49 198.7 220 53.6
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 9.2e-47 191.8 276 44.6
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 2.7e-46 190.3 192 53.6
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 5.9e-46 189.1 352 34.4
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 2.1e-43 180.6 331 34.7
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 5.2e-42 176.0 347 34.6
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 2.5e-36 157.1 221 45.7
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 4.7e-35 152.9 225 42.2
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 8.1e-35 152.1 225 43.6
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 3.3e-28 130.2 161 47.2
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 8.1e-27 125.6 441 27.9
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 4.4e-25 119.8 94 57.4
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 2.7e-22 110.5 249 37.8
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 1.3e-21 108.2 117 50.4
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 3.0e-21 107.1 128 45.3
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 1.2e-19 101.7 86 50.0
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 4.2e-15 86.7 75 46.7
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-14 85.1 71 64.8
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 4.6e-14 83.2 98 39.8
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 3.9e-13 80.1 189 31.7
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 7.3e-12 75.9 140 36.4
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 2.8e-11 73.9 349 24.1
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 1.4e-10 71.6 64 45.3
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 9.0e-10 68.9 38 86.8
PRCOL_00002155 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 5.8e-09 66.2 307 28.0
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 3.8e-08 63.5 182 27.5
CSS0026064 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 4.9e-08 63.2 50 54.0
Cre01.g033763 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 1.9e-07 61.2 58 55.2
PRCOL_00006890 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 1.6e-06 58.2 305 22.0
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 1.6e-06 58.2 59 50.8


User provided reference genes

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