Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 2.4e-77 294.3 681 100.0
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 2.5e-66 257.7 681 97.8
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 6.3e-57 226.5 138 81.2
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 6.9e-56 223.0 138 79.7
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 4.3e-50 203.8 138 73.2
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 1.6e-49 201.8 138 71.7
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 2.8e-49 201.1 138 71.0
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 3.7e-49 200.7 138 71.0
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 6.3e-49 199.9 138 70.3
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 9.1e-48 196.1 138 67.4
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 1.4e-45 188.7 138 63.8
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 1.4e-45 188.7 138 65.9
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 7.9e-44 183.0 138 63.8
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 1.0e-43 182.6 136 62.5
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 1.8e-43 181.8 139 65.5
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 1.8e-43 181.8 128 68.0
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 7.4e-42 176.4 138 61.6
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 9.7e-42 176.0 136 64.0
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 2.8e-41 174.5 138 64.5
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 1.1e-40 172.6 140 64.3
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 9.1e-40 169.5 138 55.1
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 2.6e-39 167.9 140 59.3
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 1.7e-38 165.2 138 62.3
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 1.7e-38 165.2 139 62.6
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 1.7e-38 165.2 138 58.7
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 1.7e-38 165.2 129 61.2
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 2.9e-38 164.5 137 59.9
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 8.5e-38 162.9 138 56.5
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 8.5e-38 162.9 138 56.5
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 8.5e-38 162.9 138 56.5
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 2.5e-37 161.4 140 57.9
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 4.2e-37 160.6 144 58.3
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 5.5e-37 160.2 137 56.2
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 5.5e-37 160.2 138 55.1
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 7.2e-37 159.8 129 61.2
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 1.2e-36 159.1 139 57.6
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 1.2e-36 159.1 139 59.7
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 2.1e-36 158.3 138 55.8
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 2.7e-36 157.9 136 55.9
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 2.0e-34 151.8 137 57.7
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 3.3e-34 151.0 137 57.7
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 5.7e-34 150.2 126 60.3
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 9.7e-34 149.4 138 53.6
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 1.3e-33 149.1 136 55.1
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 2.2e-33 148.3 138 52.9
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 8.2e-33 146.4 141 57.4
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 1.4e-32 145.6 136 54.4
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 5.3e-32 143.7 138 52.2
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 7.0e-32 143.3 141 55.3
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 9.1e-32 142.9 141 56.0
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 1.2e-31 142.5 141 55.3
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 1.2e-31 142.5 143 53.8
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 2.6e-31 141.4 142 54.9
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 2.6e-31 141.4 142 54.9
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 2.6e-31 141.4 141 56.0
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 5.9e-31 140.2 141 53.9
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 1.0e-30 139.4 141 53.9
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.0e-30 139.4 139 51.1
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 1.0e-30 139.4 139 51.1
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 1.0e-30 139.4 139 51.1
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 1.3e-30 139.0 137 54.0
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 1.3e-30 139.0 139 51.1
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 1.7e-30 138.7 116 60.3
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 2.9e-30 137.9 141 52.5
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 2.9e-30 137.9 139 51.1
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 3.8e-30 137.5 141 53.9
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 8.5e-30 136.3 140 55.7
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 1.1e-29 136.0 136 53.7
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 3.2e-29 134.4 137 54.0
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 4.2e-29 134.0 137 53.3
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 5.5e-29 133.7 137 53.3
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 7.2e-29 133.3 142 54.2
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 9.4e-29 132.9 138 50.0
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 9.4e-29 132.9 138 50.0
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 1.2e-28 132.5 142 53.5
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 1.2e-28 132.5 142 53.5
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 1.2e-28 132.5 142 53.5
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 2.7e-28 131.3 139 47.5
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 4.7e-28 130.6 138 49.3
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.8e-27 128.6 141 53.2
Cpa.g.sc53.25 Carica papaya HOM05D005287 ORTHO05D006893 5.7e-26 123.6 136 49.3
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 7.0e-24 116.7 137 46.7
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 2.9e-22 111.3 108 54.6
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 5.0e-22 110.5 77 67.5
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 7.2e-21 106.7 132 45.5
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 2.7e-20 104.8 74 63.5
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 2.6e-18 98.2 88 53.4
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 2.6e-18 98.2 68 66.2
arahy.Tifrunner.gnm1.ann1.KW58JW Arachis hypogaea HOM05D005287 ORTHO05D006893 5.7e-18 97.1 132 49.2
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 5.7e-18 97.1 77 58.4
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 7.5e-18 96.7 95 50.5
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 1.3e-17 95.9 132 42.4
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-17 95.5 86 54.7
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 4.8e-17 94.0 89 50.6
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 6.3e-17 93.6 77 55.8
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 6.3e-17 93.6 77 58.4
HanXRQChr09g0246521 Helianthus annuus HOM05D005287 ORTHO05D006893 1.1e-16 92.8 85 54.1
SalBow2G1472 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.1e-16 92.8 100 49.0
PSO210G1683 Papaver somniferum HOM05D005287 ORTHO05D006893 4.1e-16 90.9 106 48.1
PSO210G6828 Papaver somniferum HOM05D005287 ORTHO05D006893 5.4e-16 90.5 104 50.0
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 3.5e-15 87.8 76 53.9
arahy.Tifrunner.gnm1.ann1.0HW3LW Arachis hypogaea HOM05D005287 ORTHO05D006893 5.9e-15 87.0 139 44.6
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 3.8e-14 84.3 67 61.2
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 3.8e-14 84.3 73 56.2
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 6.5e-14 83.6 79 54.4
Carub.0003s3067 Capsella rubella HOM05D005287 ORTHO05D006893 2.5e-13 81.6 85 52.9
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 2.8e-12 78.2 77 50.6
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.0e-11 76.3 74 48.6
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 1.0e-11 76.3 74 48.6
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 2.3e-11 75.1 78 48.7
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 8.9e-11 73.2 67 52.2
SalBow1G2833 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.5e-10 72.4 67 53.7
SalBow4G1805 Salvia bowleyana HOM05D005287 ORTHO05D006893 1.5e-10 72.4 67 53.7
SalBow2G3146 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.0e-10 72.0 67 52.2
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 7.5e-10 70.1 63 50.8
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 9.8e-10 69.7 76 47.4
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-09 68.6 71 46.5
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 2.2e-09 68.6 71 46.5
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 3.7e-09 67.8 71 46.5
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 1.8e-08 65.5 136 29.4
Zm00001eb007770 Zea mays HOM05D005287 ORTHO05D006893 5.4e-08 63.9 132 29.5
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 9.2e-08 63.2 71 45.1
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 1.3e-06 59.3 70 40.0
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 3.8e-06 57.8 111 26.1
Os03g0201400 Oryza sativa ssp. japonica HOM05D005287 ORTHO05D006893 6.6e-06 57.0 100 31.0


User provided reference genes

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