Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 1.4e-105 386.3 195 100.0
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 3.7e-87 325.1 168 95.8
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 2.8e-71 272.3 168 79.8
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 9.5e-59 230.7 168 67.9
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 2.1e-58 229.6 172 65.7
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 3.6e-58 228.8 179 64.8
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.1e-57 227.3 168 66.7
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 5.2e-57 224.9 128 87.5
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 5.2e-57 224.9 170 65.9
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 1.5e-56 223.4 166 66.3
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 1.5e-56 223.4 166 68.7
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 2.0e-56 223.0 168 64.3
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 2.6e-56 222.6 167 65.9
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 4.4e-56 221.9 168 66.7
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 9.8e-56 220.7 185 57.8
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 1.3e-55 220.3 163 65.6
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 1.7e-55 219.9 168 64.3
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 1.7e-55 219.9 168 64.9
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 2.9e-55 219.2 168 66.1
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 4.9e-55 218.4 185 57.3
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 4.9e-55 218.4 177 61.0
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 6.4e-55 218.0 185 57.3
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 6.4e-55 218.0 172 62.2
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 6.4e-55 218.0 175 62.3
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 6.4e-55 218.0 167 64.1
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 6.4e-55 218.0 168 63.7
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 6.4e-55 218.0 168 64.3
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 8.3e-55 217.6 172 63.4
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.1e-54 217.2 185 56.8
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 1.1e-54 217.2 168 64.3
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 2.4e-54 216.1 172 62.2
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 2.4e-54 216.1 172 62.2
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 4.1e-54 215.3 165 66.7
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 5.4e-54 214.9 180 59.4
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.4e-54 214.9 168 63.1
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.6e-53 213.4 168 62.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.0e-53 213.0 168 62.5
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 3.5e-53 212.2 167 61.7
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 3.5e-53 212.2 166 63.9
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 3.5e-53 212.2 166 63.9
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 6.0e-53 211.5 166 63.9
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 1.3e-52 210.3 182 56.6
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 1.7e-52 209.9 166 63.3
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 2.3e-52 209.5 166 63.3
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 3.9e-52 208.8 167 61.7
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 8.6e-52 207.6 167 61.1
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 1.5e-51 206.8 168 61.9
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.9e-51 206.5 167 60.5
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 2.5e-51 206.1 168 58.9
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 2.5e-51 206.1 154 66.2
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 4.3e-51 205.3 172 60.5
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 4.3e-51 205.3 187 56.7
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 4.3e-51 205.3 168 58.3
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 4.3e-51 205.3 172 56.4
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 5.6e-51 204.9 172 58.7
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 7.3e-51 204.5 172 56.4
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 9.5e-51 204.1 172 59.9
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 9.5e-51 204.1 172 59.9
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 9.5e-51 204.1 166 59.6
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 1.6e-50 203.4 181 56.9
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 2.1e-50 203.0 166 61.4
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 4.7e-50 201.8 172 58.1
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 6.2e-50 201.4 172 57.0
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 8.1e-50 201.1 166 60.8
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 1.1e-49 200.7 167 60.5
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 2.3e-49 199.5 182 57.1
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 4.0e-49 198.7 158 63.9
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 8.9e-49 197.6 166 59.0
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 8.9e-49 197.6 172 56.4
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 8.9e-49 197.6 160 61.9
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 1.5e-48 196.8 163 61.3
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 2.6e-48 196.1 163 61.3
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 3.4e-48 195.7 167 59.3
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 3.4e-48 195.7 152 65.1
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 3.4e-48 195.7 172 56.4
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 7.5e-48 194.5 181 55.8
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 9.9e-48 194.1 151 63.6
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 2.9e-47 192.6 164 61.0
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 3.7e-47 192.2 172 54.7
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 1.9e-46 189.9 167 56.9
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 1.9e-46 189.9 192 55.7
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 4.1e-46 188.7 172 55.2
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 9.2e-46 187.6 155 59.4
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 1.2e-45 187.2 167 58.1
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 6.0e-45 184.9 167 55.1
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 7.8e-45 184.5 192 54.2
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 1.3e-44 183.7 150 62.0
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 6.6e-44 181.4 174 52.3
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 6.2e-42 174.9 138 63.8
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 2.0e-40 169.9 133 65.4
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 7.6e-40 167.9 136 63.2
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 2.9e-39 166.0 194 46.9
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 3.9e-36 155.6 126 59.5
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 8.6e-36 154.5 126 61.9
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 1.1e-35 154.1 134 56.7
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 1.5e-35 153.7 132 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 5.6e-35 151.8 176 46.6
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 2.8e-34 149.4 126 57.1
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 4.7e-34 148.7 175 46.3
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 8.1e-34 147.9 193 43.5
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.7e-31 140.2 97 63.9
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 1.1e-30 137.5 105 65.7
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.1e-30 137.5 173 43.9
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 3.4e-24 115.9 128 47.7
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 2.9e-23 112.8 166 39.8
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 3.2e-22 109.4 152 45.4
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 4.6e-21 105.5 183 35.0
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 1.0e-20 104.4 173 38.2
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 1.8e-17 93.6 158 38.6
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 1.2e-16 90.9 183 33.9
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 4.5e-16 89.0 133 39.8
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 9.9e-16 87.8 111 44.1
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 2.9e-15 86.3 167 31.1
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 9.6e-11 71.2 48 64.6


User provided reference genes

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