Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.2e-74 281.6 131 100.0
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.1e-53 213.4 134 78.4
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 7.1e-34 147.5 131 58.8
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 8.7e-24 114.0 128 50.0
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 2.0e-20 102.8 91 64.8
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 7.6e-20 100.9 95 54.7
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 4.9e-19 98.2 96 55.2
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 7.1e-18 94.4 92 51.1
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.2e-17 93.6 110 47.3
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.1e-17 92.8 91 50.5
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.1e-17 92.8 124 43.5
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.5e-17 92.0 88 51.1
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 4.6e-17 91.7 89 49.4
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 4.6e-17 91.7 88 50.0
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 7.9e-17 90.9 91 48.4
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.0e-16 90.5 88 51.1
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.3e-16 90.1 91 50.5
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.8e-16 89.7 88 48.9
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.3e-16 89.4 91 46.2
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 2.3e-16 89.4 89 52.8
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 3.0e-16 89.0 93 44.1
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.9e-16 88.6 88 47.7
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 3.9e-16 88.6 92 47.8
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 5.1e-16 88.2 97 48.5
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 5.1e-16 88.2 88 47.7
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 5.1e-16 88.2 90 50.0
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 5.1e-16 88.2 90 51.1
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 6.7e-16 87.8 91 44.0
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 6.7e-16 87.8 99 46.5
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 8.7e-16 87.4 94 48.9
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.5e-15 86.7 92 50.0
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 1.9e-15 86.3 92 47.8
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.9e-15 86.3 97 43.3
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.9e-15 86.3 90 43.3
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.5e-15 85.9 88 46.6
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.5e-15 85.9 88 46.6
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.5e-15 85.9 88 47.7
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 3.3e-15 85.5 88 46.6
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.3e-15 85.5 99 46.5
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 3.3e-15 85.5 88 46.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 3.3e-15 85.5 93 49.5
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 3.3e-15 85.5 93 48.4
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 4.3e-15 85.1 90 44.4
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 5.7e-15 84.7 88 47.7
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.3e-14 83.6 89 49.4
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.3e-14 83.6 93 46.2
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.6e-14 83.2 88 48.9
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 2.1e-14 82.8 88 46.6
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 2.1e-14 82.8 93 44.1
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.8e-14 82.4 90 46.7
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.8e-14 82.4 91 46.2
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.7e-14 82.0 88 46.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 3.7e-14 82.0 88 45.5
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.8e-14 81.6 89 50.6
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.8e-14 81.6 89 44.9
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.8e-14 81.6 97 43.3
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.8e-14 81.6 88 46.6
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 4.8e-14 81.6 97 45.4
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 6.3e-14 81.3 88 44.3
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 6.3e-14 81.3 88 44.3
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.2e-14 80.9 87 49.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 8.2e-14 80.9 87 49.4
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 8.2e-14 80.9 91 44.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 8.2e-14 80.9 95 48.4
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 8.2e-14 80.9 91 42.9
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.4e-13 80.1 88 46.6
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.4e-13 80.1 90 45.6
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.4e-13 80.1 88 46.6
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.4e-13 80.1 87 49.4
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.8e-13 79.7 88 45.5
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.8e-13 79.7 85 45.9
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.1e-13 79.0 99 45.5
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.1e-13 79.0 91 42.9
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.1e-13 79.0 89 48.3
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 3.1e-13 79.0 89 46.1
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.1e-13 78.6 89 48.3
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 5.3e-13 78.2 90 43.3
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.3e-13 78.2 92 42.4
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 5.3e-13 78.2 88 50.0
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 5.3e-13 78.2 124 40.3
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 6.9e-13 77.8 90 43.3
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 6.9e-13 77.8 87 47.1
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 9.0e-13 77.4 89 44.9
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.0e-13 77.4 94 47.9
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.2e-12 77.0 89 44.9
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-12 77.0 85 45.9
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.2e-12 77.0 89 47.2
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.5e-12 76.6 89 44.9
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 1.5e-12 76.6 87 49.4
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.5e-12 76.6 87 47.1
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.0e-12 76.3 107 42.1
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.0e-12 76.3 87 46.0
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.0e-12 76.3 83 47.0
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.0e-12 76.3 87 47.1
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.0e-12 76.3 87 48.3
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.0e-12 76.3 88 47.7
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.6e-12 75.9 88 43.2
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.4e-12 75.5 87 48.3
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 3.4e-12 75.5 91 46.2
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 4.5e-12 75.1 87 47.1
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 4.5e-12 75.1 87 46.0
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.5e-12 75.1 88 43.2
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 5.9e-12 74.7 99 40.4
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 7.6e-12 74.3 88 43.2
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 7.6e-12 74.3 91 47.3
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 7.6e-12 74.3 84 48.8
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.0e-11 73.9 88 48.9
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-11 73.9 88 43.2
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-11 73.9 116 38.8
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.0e-11 73.9 116 38.8
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-11 73.9 88 43.2
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.0e-11 73.9 85 47.1
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-11 73.6 86 43.0
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-11 73.6 81 44.4
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.3e-11 73.6 86 43.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.3e-11 73.6 88 44.3
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.7e-11 73.2 88 43.2
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.7e-11 73.2 88 43.2
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.7e-11 73.2 88 43.2
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.7e-11 73.2 88 43.2
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.7e-11 73.2 87 43.7
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.7e-11 73.2 87 46.0
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.7e-11 73.2 90 44.4
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.2e-11 72.8 86 43.0
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.2e-11 72.8 86 43.0
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 2.2e-11 72.8 84 46.4
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.9e-11 72.4 88 42.0
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.8e-11 72.0 92 50.0
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 6.5e-11 71.2 111 36.0
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 6.5e-11 71.2 92 46.7
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 6.5e-11 71.2 92 46.7
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 8.4e-11 70.9 87 44.8
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.1e-10 70.5 87 43.7
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.4e-10 70.1 84 47.6
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.4e-10 70.1 88 38.6
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.9e-10 69.7 81 42.0
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.9e-10 69.7 87 43.7
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.5e-10 69.3 89 41.6
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 2.5e-10 69.3 87 47.1
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.2e-10 68.6 93 45.2
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 5.5e-10 68.2 87 44.8
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.5e-10 68.2 89 46.1
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 5.5e-10 68.2 84 44.0
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 7.2e-10 67.8 95 44.2
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 9.3e-10 67.4 89 44.9
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 1.6e-09 66.6 87 43.7
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.6e-09 66.6 82 46.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.6e-09 66.6 80 40.0
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 2.1e-09 66.2 93 46.2
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.5e-09 65.5 87 40.2
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.5e-09 65.5 87 40.2
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.6e-09 65.1 89 44.9
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.6e-09 65.1 88 43.2
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 6.1e-09 64.7 90 38.9
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 6.1e-09 64.7 84 41.7
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 6.1e-09 64.7 85 43.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.0e-08 63.9 95 44.2
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.3e-08 63.5 95 41.1
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.3e-08 63.5 89 40.4
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-08 62.8 86 44.2
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-08 62.8 99 40.4
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 2.3e-08 62.8 87 40.2
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.3e-08 62.8 96 41.7
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.0e-08 62.4 91 39.6
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.9e-08 62.0 98 40.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 3.9e-08 62.0 87 43.7
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.1e-08 61.6 82 45.1
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 5.1e-08 61.6 46 54.3
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.1e-08 61.6 90 43.3
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 8.7e-08 60.8 87 41.4
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.9e-07 59.7 88 42.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.3e-07 58.9 91 38.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.6e-06 56.6 88 42.0
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 2.2e-06 56.2 97 37.1
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.8e-06 55.8 88 40.9
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.3e-06 54.7 58 44.8
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.3e-06 54.7 89 41.6
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.3e-06 54.7 85 40.0


User provided reference genes

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