Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 1.2e-191 672.9 335 100.0
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 3.5e-178 628.2 328 95.7
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.7e-146 522.3 328 82.6
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.7e-146 522.3 328 82.6
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.7e-146 522.3 328 82.6
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 4.0e-41 172.9 313 40.3
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 8.4e-39 165.2 302 39.4
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.1e-38 164.9 260 43.1
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 7.1e-38 162.2 295 41.0
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 1.2e-37 161.4 260 42.7
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.7e-37 160.2 259 41.7
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 3.5e-37 159.8 307 41.0
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 1.0e-36 158.3 242 42.1
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.0e-36 156.8 302 38.7
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 3.0e-36 156.8 302 38.7
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 8.7e-36 155.2 329 38.9
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 8.7e-36 155.2 342 37.7
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.5e-35 153.7 335 36.7
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 7.4e-35 152.1 271 41.0
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 9.6e-35 151.8 345 38.3
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 2.8e-34 150.2 270 37.4
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 4.8e-34 149.4 336 36.3
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 4.8e-34 149.4 281 39.9
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 2.4e-33 147.1 295 36.6
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.0e-33 146.4 350 34.9
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.5e-32 144.4 254 40.6
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 6.5e-31 139.0 317 36.9
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 2.5e-30 137.1 257 38.1
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 4.2e-30 136.3 327 35.5
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 7.1e-30 135.6 336 32.7
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 9.3e-30 135.2 324 34.6
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.2e-29 134.8 316 37.7
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 2.1e-29 134.0 271 39.5
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 4.6e-29 132.9 336 32.4
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 7.9e-29 132.1 277 39.0
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.3e-28 130.6 343 35.3
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 3.9e-28 129.8 295 34.6
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 1.5e-27 127.9 269 36.8
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 1.9e-27 127.5 322 32.6
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 7.4e-27 125.6 308 35.7
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 2.2e-26 124.0 268 36.2
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 1.1e-25 121.7 244 36.1
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.4e-25 120.6 271 36.2
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 3.1e-25 120.2 243 38.3
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 4.1e-25 119.8 263 36.1
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 4.1e-25 119.8 252 36.9
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.5e-24 117.9 278 35.3
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 4.5e-24 116.3 271 36.9
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 5.9e-24 115.9 270 35.6
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 1.0e-23 115.2 263 35.4
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 1.3e-23 114.8 256 37.1
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 1.3e-23 114.8 288 33.3
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 1.7e-23 114.4 267 37.1
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 8.5e-23 112.1 234 38.0
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 8.5e-23 112.1 319 32.9
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 8.5e-23 112.1 259 33.6
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 8.5e-23 112.1 266 34.6
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 8.5e-23 112.1 270 34.4
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 1.4e-22 111.3 233 37.8
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 1.4e-22 111.3 264 33.0
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.9e-22 110.9 270 32.6
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 2.5e-22 110.5 242 35.5
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 7.2e-22 109.0 260 34.6
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 9.4e-22 108.6 257 37.4
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.2e-21 108.2 259 33.6
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.6e-21 107.8 243 34.6
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 6.1e-21 105.9 304 32.9
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 2.3e-20 104.0 334 30.8
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 3.9e-20 103.2 254 35.4
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 5.1e-20 102.8 285 30.9
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 5.1e-20 102.8 262 33.2
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 5.1e-20 102.8 260 30.8
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 8.8e-20 102.1 346 30.6
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 1.5e-19 101.3 239 36.0
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 1.5e-19 101.3 263 35.7
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 2.5e-19 100.5 244 32.4
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 3.3e-19 100.1 238 34.0
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 5.7e-19 99.4 256 32.8
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 2.8e-18 97.1 281 29.9
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 4.8e-18 96.3 233 36.5
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 6.3e-18 95.9 250 31.6
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 1.8e-17 94.4 245 29.8
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 1.8e-17 94.4 185 37.8
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 1.8e-17 94.4 341 31.7
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 5.3e-17 92.8 347 29.7
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.2e-16 91.7 270 30.7
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 2.0e-16 90.9 274 32.1
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 2.0e-16 90.9 243 34.2
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 2.6e-16 90.5 271 31.4
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 4.5e-16 89.7 243 34.2
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 1.0e-15 88.6 229 31.4
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 1.0e-15 88.6 248 33.1
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 2.9e-15 87.0 229 32.8
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 1.4e-14 84.7 273 31.1
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 2.5e-14 84.0 227 32.2
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 3.2e-14 83.6 234 31.6
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 4.2e-14 83.2 234 31.6
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 9.4e-14 82.0 234 31.6
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 4.7e-13 79.7 260 30.4
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 4.7e-13 79.7 247 31.6
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 1.7e-10 71.2 178 33.1
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.8e-09 67.8 264 28.8
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 2.4e-09 67.4 233 28.3
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 2.4e-09 67.4 249 30.5
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 1.7e-07 61.2 156 34.6
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 5.5e-06 56.2 264 27.7
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 5.5e-06 56.2 227 28.6


User provided reference genes

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