Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 1.2e-118 429.9 225 100.0
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 2.0e-113 412.5 225 96.9
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 6.6e-104 380.9 225 91.1
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 3.1e-93 345.5 225 83.1
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 2.3e-88 329.3 228 81.6
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 1.6e-65 253.4 230 63.0
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 4.6e-65 251.9 231 63.2
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 5.1e-64 248.4 231 62.8
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 1.3e-62 243.8 223 65.0
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 2.1e-62 243.0 217 63.1
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 2.8e-62 242.7 222 60.4
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 3.6e-62 242.3 225 62.2
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 6.2e-62 241.5 222 63.1
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 6.2e-62 241.5 229 61.1
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 6.2e-62 241.5 230 62.2
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 8.1e-62 241.1 221 62.0
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 3.1e-61 239.2 231 61.5
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 4.0e-61 238.8 218 61.9
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 6.9e-61 238.0 227 60.8
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 2.0e-60 236.5 232 61.6
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 4.4e-60 235.3 218 61.5
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 9.9e-60 234.2 236 58.9
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.7e-59 233.4 218 61.0
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 8.4e-59 231.1 215 60.9
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 1.1e-58 230.7 217 60.8
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 3.2e-58 229.2 233 59.2
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 3.2e-58 229.2 229 59.4
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 3.2e-58 229.2 229 60.3
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 4.2e-58 228.8 229 59.8
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 5.4e-58 228.4 235 57.4
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 5.4e-58 228.4 229 59.8
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 1.6e-57 226.9 231 58.0
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 2.7e-57 226.1 237 58.6
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 4.6e-57 225.3 215 60.5
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 1.0e-56 224.2 237 58.6
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 1.5e-55 220.3 238 55.9
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 3.6e-54 215.7 222 58.1
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 4.5e-52 208.8 225 56.0
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 5.8e-52 208.4 221 55.2
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 5.8e-52 208.4 164 68.9
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 1.7e-51 206.8 216 56.9
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 3.8e-51 205.7 224 54.0
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 6.4e-51 204.9 236 54.7
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 4.2e-50 202.2 241 51.9
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 4.2e-50 202.2 232 53.9
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 4.2e-50 202.2 208 57.2
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 5.5e-50 201.8 234 53.8
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 9.3e-50 201.1 216 56.0
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 1.2e-49 200.7 248 52.8
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 1.2e-49 200.7 235 54.5
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 1.6e-49 200.3 250 49.6
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 2.1e-49 199.9 234 53.8
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 2.1e-49 199.9 241 53.1
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 7.9e-49 198.0 237 51.5
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 2.3e-48 196.4 239 51.5
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.0e-48 196.1 226 53.1
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 3.0e-48 196.1 252 49.6
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 3.0e-48 196.1 217 54.8
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.5e-47 193.7 240 50.8
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 1.5e-47 193.7 218 55.0
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 2.5e-47 193.0 225 55.6
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 5.6e-47 191.8 182 59.3
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 9.6e-47 191.0 248 49.6
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 1.3e-46 190.7 251 49.4
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 1.3e-46 190.7 252 49.2
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 4.8e-46 188.7 243 49.8
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 4.8e-46 188.7 209 54.1
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 1.1e-45 187.6 255 49.8
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 1.1e-45 187.6 239 50.2
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.4e-45 187.2 253 48.6
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.4e-45 187.2 253 48.6
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 1.8e-45 186.8 157 63.1
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 2.4e-45 186.4 248 50.0
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 4.0e-45 185.7 160 60.0
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 5.3e-45 185.3 249 47.8
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 5.3e-45 185.3 249 47.8
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 9.0e-45 184.5 240 49.2
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 1.2e-44 184.1 198 54.0
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 1.5e-44 183.7 261 46.4
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 1.5e-44 183.7 261 46.4
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 1.5e-44 183.7 261 46.4
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 5.8e-44 181.8 228 47.8
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 7.6e-44 181.4 197 55.3
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 3.8e-43 179.1 150 63.3
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.4e-42 177.2 225 51.1
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 2.5e-42 176.4 176 55.7
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 3.2e-42 176.0 207 52.2
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 9.3e-42 174.5 184 54.9
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 1.6e-41 173.7 239 46.4
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 3.5e-41 172.6 217 52.1
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 1.0e-40 171.0 250 45.2
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 6.7e-40 168.3 241 46.9
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 5.3e-37 158.7 253 43.9
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 1.2e-36 157.5 177 52.5
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 2.6e-36 156.4 224 49.6
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 1.0e-35 154.5 182 51.1
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.3e-35 154.1 232 46.1
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.3e-32 144.1 203 47.3
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 2.3e-32 143.3 221 43.4
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 3.0e-32 142.9 231 43.3
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 1.8e-29 133.7 234 43.2
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 4.1e-29 132.5 230 40.0
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 3.2e-26 122.9 174 48.9
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.1e-25 120.2 109 58.7
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 2.7e-25 119.8 256 35.5
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 2.0e-20 103.6 231 35.9
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 7.2e-18 95.1 181 42.5
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 1.2e-17 94.4 54 88.9
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 3.6e-17 92.8 94 55.3
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 5.1e-16 89.0 51 86.3
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 5.1e-16 89.0 62 71.0
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 9.7e-15 84.7 110 48.2
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 6.3e-14 82.0 116 46.6
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 1.3e-11 74.3 142 40.1
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 1.3e-11 74.3 142 40.1
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 7.2e-10 68.6 51 64.7
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 1.6e-09 67.4 94 42.6
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 4.7e-09 65.9 94 39.4
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 1.3e-06 57.8 56 53.6
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 1.7e-06 57.4 88 38.6


User provided reference genes

Program Settings