Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.3e-112 409.8 223 100.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 4.2e-95 351.7 204 95.1
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.9e-63 246.5 208 67.8
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.0e-60 236.5 193 66.8
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.1e-58 228.8 150 75.3
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 7.0e-58 228.0 199 64.3
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 9.2e-58 227.6 190 64.2
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.6e-57 226.9 149 75.8
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.6e-57 226.9 149 75.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 4.6e-57 225.3 207 60.4
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 6.0e-57 224.9 199 63.8
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.3e-56 223.8 212 59.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.3e-56 223.8 155 72.9
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 1.7e-56 223.4 150 74.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.7e-56 223.4 149 74.5
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.0e-56 222.6 150 72.7
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 6.6e-56 221.5 200 62.5
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.5e-55 219.5 146 74.7
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.5e-55 219.5 146 74.7
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.5e-55 219.5 195 62.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.3e-55 218.8 197 63.5
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 5.6e-55 218.4 193 61.1
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 5.6e-55 218.4 193 61.1
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 7.3e-55 218.0 211 61.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 9.5e-55 217.6 193 61.7
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 9.5e-55 217.6 206 60.2
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 9.5e-55 217.6 152 70.4
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.2e-54 217.2 195 64.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-54 216.5 146 74.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 2.1e-54 216.5 205 58.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.8e-54 216.1 206 58.7
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.8e-54 216.1 185 62.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 4.7e-54 215.3 193 61.1
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 6.2e-54 214.9 193 61.7
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 6.2e-54 214.9 193 61.7
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 6.2e-54 214.9 193 61.7
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 6.2e-54 214.9 193 61.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 8.1e-54 214.5 193 60.1
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-53 214.2 206 59.7
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.4e-53 213.8 229 57.2
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.4e-53 213.8 193 61.1
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.4e-53 213.8 150 71.3
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 2.3e-53 213.0 153 71.9
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 3.1e-53 212.6 149 72.5
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 4.0e-53 212.2 193 62.2
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.0e-53 212.2 194 62.4
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 5.2e-53 211.8 193 62.7
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 5.2e-53 211.8 193 62.7
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 5.2e-53 211.8 183 63.9
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 5.2e-53 211.8 211 58.3
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 5.2e-53 211.8 207 59.4
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 5.2e-53 211.8 201 60.2
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 6.8e-53 211.5 148 72.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 8.9e-53 211.1 201 58.7
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.2e-52 210.7 199 61.3
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.2e-52 210.7 199 61.3
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-52 210.3 193 61.7
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 2.0e-52 209.9 193 59.6
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 2.0e-52 209.9 193 61.1
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 3.4e-52 209.1 149 70.5
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 4.4e-52 208.8 208 58.7
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 5.8e-52 208.4 200 61.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 5.8e-52 208.4 199 60.8
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 7.5e-52 208.0 150 70.0
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.3e-51 207.2 150 71.3
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.7e-51 206.8 150 70.7
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.7e-51 206.8 208 58.7
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.2e-51 206.5 201 59.7
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 2.9e-51 206.1 151 70.2
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 2.9e-51 206.1 140 85.7
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 3.7e-51 205.7 148 70.3
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 6.4e-51 204.9 151 69.5
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.4e-51 204.9 207 58.5
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 6.4e-51 204.9 149 69.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-50 204.1 149 67.8
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.1e-50 204.1 203 59.1
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.1e-50 204.1 190 60.5
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.1e-50 204.1 206 57.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.4e-50 203.8 151 68.9
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.9e-50 203.4 205 58.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.9e-50 203.4 149 69.1
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.4e-50 203.0 187 59.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 5.4e-50 201.8 207 58.5
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 7.1e-50 201.4 150 69.3
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.2e-49 200.7 202 58.4
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.2e-49 200.7 151 67.5
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.6e-49 200.3 148 67.6
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.6e-49 200.3 147 67.3
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.6e-49 200.3 202 58.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-49 200.3 202 58.4
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-49 200.3 202 58.4
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-49 200.3 202 58.4
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 2.1e-49 199.9 200 59.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.5e-49 199.1 150 67.3
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 4.6e-49 198.7 204 58.3
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.6e-49 198.7 203 58.6
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 2.5e-47 193.0 211 56.4
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.3e-47 192.6 148 66.2
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.3e-47 192.2 201 58.7
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 9.5e-47 191.0 207 55.1
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.6e-46 190.3 206 55.8
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.6e-46 189.1 203 54.7
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.2e-46 188.3 208 55.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 6.2e-46 188.3 209 56.5
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-45 187.2 159 62.9
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.3e-45 186.4 207 55.1
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 6.8e-45 184.9 255 45.1
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 8.9e-45 184.5 214 55.1
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 8.4e-43 177.9 152 61.2
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 9.2e-42 174.5 128 69.5
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.2e-41 174.1 145 61.4
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.7e-41 172.9 128 67.2
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 2.3e-40 169.9 208 50.5
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 6.6e-40 168.3 186 52.7
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 6.6e-40 168.3 95 87.4
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 8.6e-40 167.9 208 51.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.5e-39 166.4 149 59.1
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.3e-39 166.0 205 49.8
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.3e-39 166.0 205 49.8
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 4.3e-39 165.6 294 40.8
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 5.6e-39 165.2 199 53.3
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 9.6e-39 164.5 121 67.8
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.4e-36 156.0 206 51.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.3e-35 154.1 211 46.9
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 2.9e-35 152.9 117 66.7
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.9e-35 152.9 170 48.2
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 8.4e-35 151.4 168 48.8
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.7e-33 146.4 162 53.1
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 6.0e-33 145.2 96 74.0
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.3e-30 137.5 215 44.7
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 1.6e-30 137.1 139 48.9
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 8.1e-30 134.8 102 58.8
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.8e-29 133.7 102 58.8
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 6.9e-29 131.7 102 57.8
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 3.4e-28 129.4 102 56.9
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.7e-27 127.1 74 82.4
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.7e-27 127.1 102 53.9
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.0e-24 117.9 87 64.4
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.9e-24 115.9 67 85.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.9e-24 115.9 67 85.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 9.6e-23 111.3 74 74.3
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.0e-13 79.3 131 45.8
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 9.0e-13 78.2 72 58.3
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.0e-11 74.7 50 70.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.3e-06 57.8 130 31.5


User provided reference genes

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