Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 1.3e-21 105.5 55 100.0
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 5.7e-17 90.1 54 85.2
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 4.6e-11 70.5 54 68.5
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 6.1e-11 70.1 49 69.4
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 1.3e-10 68.9 46 73.9
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 5.1e-10 67.0 50 62.0
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 1.1e-09 65.9 46 67.4
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 1.5e-09 65.5 54 57.4
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 3.3e-09 64.3 50 62.0
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 4.3e-09 63.9 45 66.7
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 5.7e-09 63.5 43 67.4
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 5.7e-09 63.5 46 67.4
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 1.3e-08 62.4 46 63.0
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 1.3e-08 62.4 46 65.2
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 1.3e-08 62.4 54 59.3
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 1.6e-08 62.0 45 68.9
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 1.6e-08 62.0 46 65.2
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 2.8e-08 61.2 49 61.2
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 3.7e-08 60.8 45 64.4
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 3.7e-08 60.8 53 60.4
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 4.8e-08 60.5 45 62.2
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 6.3e-08 60.1 52 55.8
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 6.3e-08 60.1 49 57.1
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 8.2e-08 59.7 45 66.7
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 8.2e-08 59.7 45 66.7
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 8.2e-08 59.7 52 57.7
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 1.1e-07 59.3 52 57.7
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 1.1e-07 59.3 52 57.7
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 1.4e-07 58.9 45 64.4
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 1.4e-07 58.9 46 60.9
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.8e-07 58.5 45 64.4
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.8e-07 58.5 45 64.4
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 1.8e-07 58.5 55 54.5
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 2.4e-07 58.2 52 55.8
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 3.1e-07 57.8 45 60.0
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 4.1e-07 57.4 45 64.4
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 4.1e-07 57.4 45 64.4
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 4.1e-07 57.4 45 60.0
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 4.1e-07 57.4 52 51.9
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 5.3e-07 57.0 49 55.1
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 9.0e-07 56.2 52 51.9
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 9.0e-07 56.2 45 60.0
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 9.0e-07 56.2 45 57.8
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.5e-06 55.5 45 57.8
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 2.0e-06 55.1 52 50.0
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 2.0e-06 55.1 49 57.1
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 2.0e-06 55.1 46 60.9
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 2.0e-06 55.1 46 63.0
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 2.0e-06 55.1 45 57.8
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 2.6e-06 54.7 46 58.7
BcaC05g27811 Brassica carinata HOM05D007891 ORTHO05D009992 3.4e-06 54.3 45 60.0
A05p24400 Brassica napus HOM05D007891 ORTHO05D009992 3.4e-06 54.3 45 60.0
C05p38140 Brassica napus HOM05D007891 ORTHO05D009992 3.4e-06 54.3 45 60.0
BolC4t25828H Brassica oleracea HOM05D007891 ORTHO05D009992 3.4e-06 54.3 45 60.0
BraA05t21332Z Brassica rapa HOM05D007891 ORTHO05D009992 3.4e-06 54.3 45 60.0
C04p42520 Brassica napus HOM05D007891 ORTHO05D009992 4.5e-06 53.9 45 60.0
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 5.9e-06 53.5 46 52.2
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 7.7e-06 53.1 45 57.8
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 7.7e-06 53.1 45 55.6
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 7.7e-06 53.1 45 55.6
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 7.7e-06 53.1 45 55.6
BcaC02g09428 Brassica carinata HOM05D007891 ORTHO05D009992 1.0e-05 52.8 45 57.8
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 1.0e-05 52.8 51 51.0


User provided reference genes

Program Settings