Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 3.0e-165 585.1 292 100.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.1e-141 504.6 292 87.3
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.5e-129 466.5 286 80.8
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 1.5e-84 317.0 295 55.6
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.5e-79 300.4 293 51.9
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.5e-76 290.4 301 53.2
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 1.3e-75 287.3 295 50.8
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 1.3e-75 287.3 292 53.1
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 8.3e-75 284.6 298 52.7
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.4e-74 283.1 292 56.2
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 9.2e-74 281.2 294 51.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 5.9e-73 278.5 288 51.0
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 7.8e-73 278.1 305 48.9
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 2.3e-72 276.6 297 49.5
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 3.0e-72 276.2 289 48.8
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.1e-71 274.2 285 49.8
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 4.3e-71 272.3 290 49.7
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 5.6e-71 271.9 287 49.5
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.4e-69 267.3 294 48.6
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.0e-68 263.5 300 47.3
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.0e-68 263.5 305 48.5
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 9.8e-68 261.2 291 48.8
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.2e-67 260.0 287 49.1
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 2.9e-67 259.6 311 46.6
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 6.4e-67 258.5 297 48.1
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 8.3e-67 258.1 287 51.2
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.3e-67 258.1 287 51.2
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 2.4e-66 256.5 291 47.4
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 3.2e-66 256.1 294 47.3
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 9.2e-66 254.6 292 46.2
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.2e-65 254.2 287 50.5
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.0e-65 253.4 291 47.4
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.7e-65 253.1 287 50.5
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 3.5e-65 252.7 291 46.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 6.0e-65 251.9 303 46.5
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 7.8e-65 251.5 332 43.4
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.3e-64 250.8 287 50.2
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.7e-64 250.4 310 46.5
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.0e-64 249.6 290 47.6
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 5.0e-64 248.8 294 46.9
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 8.6e-64 248.1 303 46.5
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.9e-63 246.9 295 46.8
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.5e-63 246.5 294 46.3
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.3e-63 246.1 288 47.9
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 4.3e-63 245.7 294 46.3
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.6e-62 243.8 295 44.4
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 2.1e-62 243.4 275 47.3
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.8e-62 243.0 294 47.3
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.8e-61 240.4 295 45.4
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.8e-61 240.4 319 46.1
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 3.1e-61 239.6 289 48.4
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 4.0e-61 239.2 289 47.8
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 4.0e-61 239.2 295 44.1
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 9.8e-60 234.6 257 50.6
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.3e-59 234.2 294 43.5
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.7e-59 233.8 216 55.6
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.7e-59 233.8 296 43.9
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 2.9e-59 233.0 289 45.7
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 4.9e-59 232.3 295 45.8
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 8.3e-59 231.5 289 46.4
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 4.1e-58 229.2 286 45.8
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 9.2e-58 228.0 285 46.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 2.1e-57 226.9 286 45.8
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.0e-56 224.6 291 45.0
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 3.9e-56 222.6 302 42.7
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.5e-55 220.7 288 43.8
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 4.3e-55 219.2 298 42.3
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 7.3e-55 218.4 288 43.1
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 4.0e-53 212.6 281 41.6
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 5.8e-52 208.8 264 43.6
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 4.1e-50 202.6 289 41.2
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 9.2e-50 201.4 204 52.5
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 3.5e-49 199.5 289 42.2
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.5e-49 199.5 266 44.4
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 1.3e-48 197.6 282 42.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 3.0e-48 196.4 299 42.1
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 5.1e-48 195.7 281 40.9
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 6.6e-48 195.3 281 40.9
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 8.6e-48 194.9 289 41.2
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 5.6e-47 192.2 209 48.8
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 9.6e-47 191.4 231 46.8
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 6.2e-46 188.7 328 36.9
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 8.1e-46 188.3 280 42.9
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.8e-45 187.2 280 39.3
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 7.6e-44 181.8 294 36.4
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.4e-42 177.6 155 59.4
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 6.0e-41 172.2 285 40.0
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.3e-40 171.0 216 44.9
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 8.7e-40 168.3 194 47.9
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 1.1e-39 167.9 225 43.6
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.8e-38 163.3 199 47.7
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 2.8e-38 163.3 287 34.8
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 1.4e-37 161.0 237 39.7
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 2.0e-36 157.1 198 42.9
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.1e-34 151.4 224 41.5
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 5.4e-34 149.1 258 38.0
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.2e-33 147.9 290 33.8
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 1.6e-33 147.5 246 41.1
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 7.9e-33 145.2 280 32.9
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 3.3e-31 139.8 192 41.7
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 8.1e-30 135.2 272 33.5
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.4e-29 134.4 81 86.4
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 1.4e-29 134.4 81 86.4
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 2.4e-29 133.7 295 32.2
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.7e-27 127.5 218 38.1
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 3.8e-27 126.3 160 44.4
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 1.1e-26 124.8 214 37.9
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 2.7e-25 120.2 137 45.3
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.0e-24 118.2 109 57.8
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.8e-24 117.5 253 31.2
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.3e-24 117.1 90 64.4
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 6.9e-21 105.5 109 50.5
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 9.0e-21 105.1 112 50.0
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 4.5e-20 102.8 144 41.7
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.6e-20 102.1 109 53.2
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.4e-18 97.8 300 26.7
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 7.1e-18 95.5 79 64.6
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.2e-17 94.7 116 41.4
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 1.6e-17 94.4 124 46.8
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.6e-17 94.4 344 24.7
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 4.3e-15 86.3 190 35.3
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.1e-14 84.0 62 62.9
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 6.3e-14 82.4 66 60.6
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 2.4e-13 80.5 62 61.3
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.7e-11 74.3 61 54.1
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 3.8e-11 73.2 51 62.7
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 5.7e-07 59.3 119 31.9


User provided reference genes

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