Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G000570 Cucumis sativus L. HOM05D007326 ORTHO05D009048 6.9e-54 213.8 112 100.0
MELO3C005879.2 Cucumis melo HOM05D007326 ORTHO05D009048 4.2e-43 177.9 112 85.7
ClCG01G000490 Citrullus lanatus HOM05D007326 ORTHO05D009048 3.6e-42 174.9 112 83.0
Sed0023316 Sechium edule HOM05D007326 ORTHO05D009048 1.5e-32 142.9 113 70.8
Gohir.A11G014200 Gossypium hirsutum HOM05D007326 ORTHO05D009048 5.9e-13 77.8 121 46.3
Gohir.D11G014400 Gossypium hirsutum HOM05D007326 ORTHO05D009048 5.9e-13 77.8 121 46.3
Gorai.007G014800 Gossypium raimondii HOM05D007326 ORTHO05D009048 5.9e-13 77.8 121 46.3
Atru.chr1.147 Acer truncatum HOM05D007326 ORTHO05D009048 1.0e-12 77.0 118 45.8
PGR042G3637 Punica granatum HOM05D007326 ORTHO05D009048 1.1e-11 73.6 116 47.4
Manes.06G159200 Manihot esculenta HOM05D007326 ORTHO05D009048 3.2e-11 72.0 120 43.3
TAR629G0302 Trochodendron aralioides HOM05D007326 ORTHO05D009048 2.7e-10 68.9 122 38.5
Ciclev10006260m.g Citrus clementina HOM05D007326 ORTHO05D009048 6.1e-10 67.8 117 43.6
VMungo0464G1195 Vigna mungo HOM05D007326 ORTHO05D009048 6.1e-10 67.8 92 44.6
COL.COLO4_03426 Corchorus olitorius HOM05D007326 ORTHO05D009048 1.0e-09 67.0 112 41.1
vmacro06547 Vaccinium macrocarpon HOM05D007326 ORTHO05D009048 1.0e-09 67.0 124 46.0
Thecc.03G195600 Theobroma cacao HOM05D007326 ORTHO05D009048 1.4e-09 66.6 119 42.9
TWI23G0901 Tripterygium wilfordii HOM05D007326 ORTHO05D009048 1.4e-09 66.6 118 46.6
ECA232G0297 Erigeron canadensis HOM05D007326 ORTHO05D009048 1.8e-09 66.2 114 40.4
Lsat_1_v5_gn_9_58181 Lactuca sativa HOM05D007326 ORTHO05D009048 2.3e-09 65.9 123 40.7
Medtr3g109290 Medicago truncatula HOM05D007326 ORTHO05D009048 3.0e-09 65.5 34 79.4
Oeu037093.1 Olea europaea HOM05D007326 ORTHO05D009048 4.0e-09 65.1 113 42.5
RcHm_v2.0_Chr1g0381021 Rosa chinensis HOM05D007326 ORTHO05D009048 4.0e-09 65.1 107 45.8
Nitab4.5_0000714g0090 Nicotiana tabacum HOM05D007326 ORTHO05D009048 5.2e-09 64.7 121 43.8
CAN.G108.61 Capsicum annuum HOM05D007326 ORTHO05D009048 6.8e-09 64.3 88 45.5
FAN10G2940 Fragaria x ananassa HOM05D007326 ORTHO05D009048 6.8e-09 64.3 114 40.4
Zm00001eb376510 Zea mays HOM05D007326 ORTHO05D009048 6.8e-09 64.3 37 73.0
MSTRG.55 Avicennia marina HOM05D007326 ORTHO05D009048 8.8e-09 63.9 112 39.3
Duzib205G1092 Durio zibethinus HOM05D007326 ORTHO05D009048 8.8e-09 63.9 120 43.3
FAN10G1221 Fragaria x ananassa HOM05D007326 ORTHO05D009048 8.8e-09 63.9 114 40.4
Cpa.g.sc3.64 Carica papaya HOM05D007326 ORTHO05D009048 1.2e-08 63.5 118 39.8
FAN06G2911 Fragaria x ananassa HOM05D007326 ORTHO05D009048 1.2e-08 63.5 111 44.1
Potri.015G017700 Populus trichocarpa HOM05D007326 ORTHO05D009048 1.2e-08 63.5 119 38.7
Rhsim09G0011500 Rhododendron simsii HOM05D007326 ORTHO05D009048 1.2e-08 63.5 122 42.6
Nitab4.5_0002492g0030 Nicotiana tabacum HOM05D007326 ORTHO05D009048 1.5e-08 63.2 116 41.4
Phvul.004G162900 Phaseolus vulgaris HOM05D007326 ORTHO05D009048 2.0e-08 62.8 30 90.0
TPR.G14875 Trifolium pratense HOM05D007326 ORTHO05D009048 2.0e-08 62.8 117 43.6
Ca_15635_v3 Cicer arietinum L. HOM05D007326 ORTHO05D009048 2.6e-08 62.4 30 86.7
Glyma.07G086800 Glycine max HOM05D007326 ORTHO05D009048 2.6e-08 62.4 86 43.0
Glyma.09G190100 Glycine max HOM05D007326 ORTHO05D009048 2.6e-08 62.4 87 46.0
Actinidia06160 Actinidia chinensis HOM05D007326 ORTHO05D009048 3.4e-08 62.0 86 45.3
CiPaw.06G009800 Carya illinoinensis HOM05D007326 ORTHO05D009048 3.4e-08 62.0 127 40.9
AUR62013031 Chenopodium quinoa HOM05D007326 ORTHO05D009048 3.4e-08 62.0 119 39.5
Sc03g0007330 Simmondsia chinensis HOM05D007326 ORTHO05D009048 3.4e-08 62.0 93 41.9
Ah.04g150610 Amaranthus hybridus HOM05D007326 ORTHO05D009048 4.4e-08 61.6 36 75.0
Haze_14278 Corylus avellana HOM05D007326 ORTHO05D009048 4.4e-08 61.6 119 38.7
Nn4g24310 Nelumbo nucifera HOM05D000291 ORTHO05D009048 4.4e-08 61.6 123 39.8
Actinidia06159 Actinidia chinensis HOM05D007326 ORTHO05D009048 5.7e-08 61.2 38 68.4
ATR0762G055 Amborella trichopoda HOM05D007326 ORTHO05D009048 5.7e-08 61.2 96 42.7
CDE05G0016 Ceratophyllum demersum HOM05D007326 ORTHO05D009048 5.7e-08 61.2 90 48.9
FAN03G0879 Fragaria x ananassa HOM05D007326 ORTHO05D009048 5.7e-08 61.2 105 41.9
Eucgr.A01472 Eucalyptus grandis HOM05D007326 ORTHO05D009048 7.5e-08 60.8 30 83.3
MBI06_g08457_MAGBIO Magnolia biondii HOM05D007326 ORTHO05D009048 7.5e-08 60.8 86 44.2
AL8G43810 Arabidopsis lyrata HOM05D007326 ORTHO05D009048 9.8e-08 60.5 30 83.3
A06p32910 Brassica napus HOM05D007326 ORTHO05D009048 9.8e-08 60.5 30 83.3
C03p59560 Brassica napus HOM05D007326 ORTHO05D009048 9.8e-08 60.5 30 83.3
BolC3t18219H Brassica oleracea HOM05D007326 ORTHO05D009048 9.8e-08 60.5 30 83.3
BraA06t26223Z Brassica rapa HOM05D007326 ORTHO05D009048 9.8e-08 60.5 30 83.3
Os06g0157800 Oryza sativa ssp. japonica HOM05D007326 ORTHO05D009048 9.8e-08 60.5 30 86.7
PGSC0003DMG400009118 Solanum tuberosum HOM05D007326 ORTHO05D009048 1.3e-07 60.1 107 42.1
TPR.G1327 Trifolium pratense HOM05D007326 ORTHO05D009048 1.3e-07 60.1 92 42.4
AT5G67490 Arabidopsis thaliana HOM05D007326 ORTHO05D009048 1.7e-07 59.7 28 85.7
BcaB02g09919 Brassica carinata HOM05D007326 ORTHO05D009048 1.7e-07 59.7 28 85.7
Carub.0008s2698 Capsella rubella HOM05D007326 ORTHO05D009048 1.7e-07 59.7 28 85.7
CARHR280100 Cardamine hirsuta HOM05D007326 ORTHO05D009048 1.7e-07 59.7 28 85.7
Dinv29296 Davidia involucrata HOM05D007326 ORTHO05D009048 1.7e-07 59.7 95 41.1
Peaxi162Scf00550g00426 Petunia axillaris HOM05D007326 ORTHO05D009048 1.7e-07 59.7 96 41.7
Lj1g0012737 Lotus japonicus HOM05D007326 ORTHO05D009048 2.2e-07 59.3 76 46.1
Oeu030278.1 Olea europaea HOM05D007326 ORTHO05D009048 2.2e-07 59.3 117 36.8
Actinidia06153 Actinidia chinensis HOM05D003276 ORTHO05D003809 8.3e-07 57.4 60 50.0
ATR0037G036 Amborella trichopoda HOM05D007326 ORTHO05D009048 8.3e-07 57.4 95 42.1
Solyc03g083450.1 Solanum lycopersicum HOM05D007326 ORTHO05D009048 8.3e-07 57.4 116 38.8
QL09p009621 Quercus lobata HOM05D007326 ORTHO05D009048 1.1e-06 57.0 115 40.0
Prupe.2G311900 Prunus persica HOM05D007326 ORTHO05D009048 1.4e-06 56.6 110 40.9
Psat0s2030g0040 Pisum sativum HOM05D007326 ORTHO05D009048 1.8e-06 56.2 116 39.7
SGA_v2.0_scaffold55G19762 Striga asiatica HOM05D007326 ORTHO05D009048 1.8e-06 56.2 113 38.1
HPP92_020021 Vanilla planifolia HOM05D007326 ORTHO05D009048 1.8e-06 56.2 41 63.4
Aqoxy7G00103 Aquilegia oxysepala HOM05D007326 ORTHO05D009048 3.1e-06 55.5 125 37.6
AUR62010038 Chenopodium quinoa HOM05D007326 ORTHO05D009048 3.1e-06 55.5 119 38.7
TAR375G0672 Trochodendron aralioides HOM05D007326 ORTHO05D009048 3.1e-06 55.5 96 38.5
TAR629G2746 Trochodendron aralioides HOM05D007326 ORTHO05D009048 3.1e-06 55.5 37 62.2
unitig_8.g3560 Utricularia gibba HOM05D000146 ORTHO05D000178 3.1e-06 55.5 34 64.7
CANSAT21G2203 Cannabis sativa HOM05D007326 ORTHO05D009048 4.1e-06 55.1 117 35.0
Nitab4.5_0000714g0080 Nicotiana tabacum HOM05D001433 ORTHO05D009048 4.1e-06 55.1 120 41.7
Manes.05G205250 Manihot esculenta HOM05D007326 ORTHO05D009048 5.4e-06 54.7 112 35.7
MCO04G224 Micromonas commoda HOM05D007326 ORTHO05D009048 5.4e-06 54.7 30 73.3
Pp3c23_5100 Physcomitrium patens HOM05D007326 ORTHO05D009048 5.4e-06 54.7 92 41.3
CBR_g41366 Chara braunii HOM05D007326 ORTHO05D009048 7.0e-06 54.3 71 43.7
CSS0025602 Camellia sinensis var. sinensis HOM05D007326 ORTHO05D009048 9.1e-06 53.9 121 39.7
Thhalv10005175m.g Eutrema salsugineum HOM05D007326 ORTHO05D009048 9.1e-06 53.9 84 42.9
Sopen03g023220 Solanum pennellii HOM05D007326 ORTHO05D009048 9.1e-06 53.9 116 37.1


User provided reference genes

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