Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 2.1e-166 589.0 305 100.0
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 1.0e-163 580.1 305 98.4
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 1.9e-154 549.3 306 94.1
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 3.7e-134 481.9 305 82.3
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 1.6e-132 476.5 305 80.0
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 2.7e-132 475.7 305 80.0
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 7.7e-132 474.2 305 80.0
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 3.8e-131 471.9 305 78.4
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 1.9e-130 469.5 305 79.3
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 2.5e-130 469.2 305 78.4
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 7.2e-130 467.6 305 78.0
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 2.1e-129 466.1 305 79.0
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 2.1e-129 466.1 305 79.7
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 3.6e-129 465.3 305 79.0
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 3.6e-129 465.3 305 78.7
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 6.1e-129 464.5 305 78.7
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 6.1e-129 464.5 305 78.7
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 6.8e-128 461.1 312 77.9
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 8.8e-128 460.7 333 74.5
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 8.8e-128 460.7 333 74.5
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 1.2e-127 460.3 305 76.4
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 3.4e-127 458.8 305 78.0
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 7.5e-127 457.6 312 77.2
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 9.8e-127 457.2 306 78.8
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 1.1e-125 453.8 308 77.6
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 4.1e-125 451.8 305 76.4
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 7.0e-125 451.1 305 78.0
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 7.0e-125 451.1 305 76.4
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 1.2e-124 450.3 313 76.4
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 1.2e-124 450.3 305 75.7
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 2.0e-124 449.5 305 73.4
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.0e-123 447.2 274 82.8
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 1.3e-123 446.8 305 76.4
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.7e-123 446.4 312 75.0
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 3.8e-123 445.3 305 75.4
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 1.9e-122 443.0 305 75.4
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 2.5e-122 442.6 306 75.2
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 2.5e-122 442.6 305 73.8
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 3.2e-122 442.2 305 75.4
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 3.2e-122 442.2 305 73.4
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 5.5e-122 441.4 309 73.8
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 5.5e-122 441.4 314 73.9
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 8.0e-121 437.6 305 73.4
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 1.4e-120 436.8 307 75.6
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 1.4e-120 436.8 307 75.6
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 1.8e-120 436.4 278 78.4
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 1.8e-120 436.4 306 75.2
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 2.3e-120 436.0 308 72.1
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 2.3e-120 436.0 309 72.2
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 4.0e-120 435.3 305 74.4
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 4.0e-120 435.3 305 75.7
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 6.8e-120 434.5 292 75.3
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 6.8e-120 434.5 305 74.1
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 8.8e-120 434.1 306 71.6
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 8.8e-120 434.1 305 73.4
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 1.2e-119 433.7 278 78.1
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 1.5e-119 433.3 306 70.9
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 2.0e-119 433.0 309 75.4
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 2.6e-119 432.6 306 72.2
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 2.6e-119 432.6 306 71.9
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 3.4e-119 432.2 305 72.5
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 4.4e-119 431.8 306 72.2
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 5.7e-119 431.4 306 70.6
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 5.7e-119 431.4 314 74.8
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 9.8e-119 430.6 306 72.2
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 9.8e-119 430.6 306 71.9
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 2.2e-118 429.5 308 71.4
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 2.2e-118 429.5 307 72.0
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 2.8e-118 429.1 351 65.2
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 3.7e-118 428.7 307 74.6
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 4.9e-118 428.3 269 79.2
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 8.3e-118 427.6 307 72.0
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 1.1e-117 427.2 305 72.5
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 2.7e-116 422.5 311 74.0
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 5.0e-115 418.3 335 66.3
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 2.5e-114 416.0 309 71.8
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 2.5e-114 416.0 271 75.3
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 4.3e-114 415.2 324 69.4
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 4.3e-114 415.2 303 69.0
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 9.5e-114 414.1 310 72.9
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 1.2e-113 413.7 309 71.5
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 1.6e-113 413.3 290 75.5
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 1.6e-113 413.3 309 71.5
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 2.1e-113 412.9 275 76.4
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 3.6e-113 412.1 310 70.6
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 7.5e-111 404.4 314 69.4
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 1.7e-110 403.3 305 67.9
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 6.6e-107 391.3 306 67.6
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 8.6e-107 391.0 306 66.3
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 9.5e-106 387.5 305 69.8
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 9.8e-103 377.5 278 73.0
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 2.4e-101 372.9 320 63.8
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.4e-101 372.9 323 62.8
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.6e-97 360.1 345 59.1
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 4.7e-97 358.6 319 61.1
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.5e-90 336.3 230 74.3
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 2.5e-90 336.3 272 65.4
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 4.4e-87 325.5 290 60.7
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 2.2e-86 323.2 237 72.2
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 2.2e-86 323.2 277 62.8
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 3.9e-83 312.4 233 72.5
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 2.0e-79 300.1 201 78.1
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 9.9e-79 297.7 259 62.2
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 5.3e-72 275.4 209 70.3
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 1.5e-71 273.9 305 50.2
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 3.8e-62 242.7 262 48.5
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 3.3e-58 229.6 192 65.6
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 1.1e-56 224.6 280 41.8
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 6.3e-49 198.7 316 41.1
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 8.5e-46 188.3 304 38.5
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 3.2e-45 186.4 155 65.2
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 6.9e-40 168.7 283 38.2
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.3e-38 164.5 182 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 2.2e-38 163.7 241 39.8
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 2.0e-34 150.6 116 69.0
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.1e-28 130.6 88 77.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 3.6e-28 129.8 216 39.8
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 1.1e-21 108.2 74 73.0
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 2.3e-19 100.5 135 48.1
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 1.5e-18 97.8 93 57.0
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 9.1e-16 88.6 81 59.3
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 1.7e-09 67.8 79 53.2
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 7.7e-07 58.9 57 49.1


User provided reference genes

Program Settings