Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.7e-293 1011.9 502 100.0
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 3.5e-275 951.0 501 94.0
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 1.3e-266 922.5 502 90.8
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 3.0e-181 639.0 497 64.6
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 1.1e-178 630.6 489 64.6
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 1.2e-177 627.1 482 63.3
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 1.2e-177 627.1 478 64.0
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 1.2e-177 627.1 477 65.0
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.5e-177 626.7 478 64.4
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 7.6e-177 624.4 465 64.7
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.3e-176 623.6 478 64.0
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 2.9e-176 622.5 471 64.5
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 1.4e-175 620.2 474 62.7
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 3.2e-175 619.0 474 64.8
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 7.1e-175 617.8 478 64.4
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 7.1e-175 617.8 478 61.9
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 4.6e-174 615.1 469 62.5
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 4.6e-174 615.1 474 63.1
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 6.0e-174 614.8 471 63.3
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 7.9e-174 614.4 471 63.1
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.0e-173 614.0 473 62.8
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 1.3e-173 613.6 466 62.9
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 6.7e-173 611.3 500 60.8
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 1.1e-172 610.5 492 60.8
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 1.9e-172 609.8 474 61.4
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 2.5e-172 609.4 486 61.5
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.4e-170 602.8 489 60.1
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 6.9e-170 601.3 458 64.2
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 2.0e-169 599.7 475 61.1
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 4.5e-169 598.6 478 60.5
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 7.6e-169 597.8 493 59.6
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 2.7e-166 589.3 475 59.4
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 3.9e-165 585.5 497 59.2
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 4.3e-164 582.0 429 63.4
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 2.1e-163 579.7 436 63.1
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 2.8e-163 579.3 490 56.5
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 4.8e-163 578.6 454 61.5
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.8e-162 576.6 417 65.0
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 1.8e-162 576.6 530 55.3
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 2.4e-162 576.2 417 65.0
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 5.3e-162 575.1 493 59.0
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 1.0e-160 570.9 463 60.0
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 8.4e-160 567.8 475 58.7
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 9.3e-159 564.3 485 56.9
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 1.2e-158 563.9 426 63.6
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 1.6e-158 563.5 477 57.7
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 1.6e-158 563.5 474 57.6
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 2.7e-158 562.8 460 58.3
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 6.0e-158 561.6 468 58.1
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 6.0e-158 561.6 468 58.3
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 2.3e-157 559.7 447 59.1
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 2.3e-157 559.7 472 57.8
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 3.9e-157 558.9 471 57.5
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 1.5e-156 557.0 459 58.6
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 1.5e-156 557.0 429 61.3
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.3e-155 553.9 459 57.5
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 1.6e-155 553.5 478 55.0
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 2.2e-155 553.1 423 61.7
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 6.3e-155 551.6 468 57.5
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 8.2e-155 551.2 483 57.1
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 1.1e-154 550.8 452 58.2
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 2.4e-154 549.7 461 57.9
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 7.6e-153 544.7 477 54.3
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 1.3e-152 543.9 409 60.4
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 5.0e-152 542.0 491 54.8
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 3.2e-151 539.3 473 56.4
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 9.4e-151 537.7 386 65.8
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 1.6e-150 537.0 477 56.6
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 1.6e-150 537.0 484 55.8
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 7.9e-150 534.6 470 56.8
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 3.0e-149 532.7 438 61.2
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 1.1e-148 530.8 476 56.3
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 5.7e-148 528.5 471 56.3
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 9.7e-148 527.7 416 60.3
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 3.7e-147 525.8 447 57.5
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 4.8e-147 525.4 501 52.9
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 6.3e-147 525.0 471 56.1
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 2.4e-146 523.1 471 56.3
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 9.1e-146 521.2 471 55.8
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 1.0e-144 517.7 518 51.9
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 3.3e-140 502.7 485 53.6
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 3.2e-135 486.1 367 59.1
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 5.3e-130 468.8 488 54.3
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 5.2e-125 452.2 294 70.1
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 2.8e-123 446.4 312 67.3
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 1.4e-122 444.1 442 48.0
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.2e-120 436.8 289 69.9
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 8.0e-118 428.3 391 51.2
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 2.8e-115 419.9 383 49.3
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 2.3e-112 410.2 288 67.0
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 6.1e-110 402.1 336 52.4
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 4.3e-103 379.4 278 62.6
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 8.0e-102 375.2 289 61.6
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 2.2e-99 367.1 482 43.2
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 8.0e-94 348.6 446 42.4
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.4e-93 347.8 489 41.5
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 8.9e-93 345.1 230 70.0
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.4e-92 343.2 262 64.5
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 1.1e-90 338.2 362 45.3
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 1.1e-90 338.2 367 44.4
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 1.4e-90 337.8 232 67.7
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 3.0e-88 330.1 220 66.4
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 4.9e-83 312.8 245 63.7
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 1.3e-67 261.5 226 56.6
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.3e-59 235.0 167 63.5
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 5.4e-58 229.6 302 38.7
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.5e-50 204.1 324 35.5
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 1.2e-44 185.3 188 53.2
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 1.1e-42 178.7 190 52.1
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 3.2e-42 177.2 180 48.9
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 7.1e-42 176.0 111 73.0
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 4.6e-41 173.3 192 50.0
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 1.1e-39 168.7 495 27.9
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 1.1e-39 168.7 388 32.0
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 1.0e-35 155.6 204 43.1
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 6.1e-33 146.4 104 66.3
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 7.7e-28 129.4 129 48.8
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.7e-27 128.3 91 67.0
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 3.8e-27 127.1 320 31.2
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 1.1e-21 109.0 98 56.1
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 2.0e-15 88.2 66 62.1
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 1.3e-14 85.5 66 56.1
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.1e-09 66.6 56 55.4
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 2.6e-07 61.2 35 60.0


User provided reference genes

Program Settings