Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 7.6e-106 387.1 186 100.0
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 8.4e-97 357.1 186 91.4
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 6.0e-79 297.7 183 77.0
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 7.9e-79 297.4 184 77.7
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.3e-78 295.8 185 74.6
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 1.5e-77 293.1 157 84.7
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.9e-77 292.7 180 76.7
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.9e-77 292.7 185 73.5
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 3.3e-77 292.0 190 74.2
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 5.6e-77 291.2 184 76.1
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 9.6e-77 290.4 181 73.5
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.6e-76 289.7 184 73.9
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.6e-76 289.7 178 78.7
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 3.7e-76 288.5 186 71.5
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 6.2e-76 287.7 218 65.6
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 1.1e-75 287.0 159 82.4
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.1e-75 287.0 158 81.6
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 6.9e-75 284.3 147 85.7
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 9.0e-75 283.9 166 80.7
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 2.0e-74 282.7 186 72.0
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 2.0e-74 282.7 186 72.0
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 2.6e-74 282.3 180 73.3
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.6e-74 282.3 188 71.8
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 2.6e-74 282.3 183 73.2
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.6e-74 282.3 183 73.2
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 3.4e-74 282.0 152 82.2
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 4.5e-74 281.6 147 85.0
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 5.8e-74 281.2 190 71.6
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 7.6e-74 280.8 158 80.4
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 7.6e-74 280.8 146 84.2
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.0e-73 280.4 183 72.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.0e-73 280.4 186 72.0
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.3e-73 280.0 178 76.4
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.3e-73 280.0 158 80.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.3e-73 280.0 178 73.6
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 2.2e-73 279.3 150 84.0
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 2.2e-73 279.3 150 84.0
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 2.2e-73 279.3 143 87.4
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.2e-73 279.3 186 71.5
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.2e-73 279.3 152 82.9
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 2.9e-73 278.9 168 78.0
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.9e-73 278.9 186 72.0
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 2.9e-73 278.9 150 82.7
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 3.8e-73 278.5 182 73.6
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 4.9e-73 278.1 176 74.4
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 4.9e-73 278.1 186 71.0
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 6.5e-73 277.7 160 80.0
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 8.4e-73 277.3 160 80.0
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 8.4e-73 277.3 183 73.2
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.1e-72 276.9 185 70.8
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.1e-72 276.9 146 84.2
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.4e-72 276.6 161 76.4
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.4e-72 276.6 161 76.4
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.4e-72 276.6 179 72.1
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 2.5e-72 275.8 159 79.2
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 3.2e-72 275.4 143 86.7
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 3.2e-72 275.4 143 86.0
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 3.2e-72 275.4 147 83.7
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 4.2e-72 275.0 150 80.7
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.2e-71 273.5 153 81.7
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.6e-71 273.1 164 78.0
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.6e-71 273.1 185 71.4
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.1e-71 272.7 158 77.8
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 2.1e-71 272.7 182 73.6
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 3.5e-71 271.9 229 61.1
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 6.0e-71 271.2 171 76.0
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 6.0e-71 271.2 171 76.0
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 6.0e-71 271.2 157 77.1
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.0e-70 270.4 175 72.6
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.0e-70 270.4 182 73.1
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.0e-70 270.4 153 80.4
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 1.0e-70 270.4 145 82.8
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.3e-70 270.0 153 80.4
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 1.8e-70 269.6 160 79.4
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 1.9e-69 266.2 175 71.4
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 1.9e-69 266.2 178 70.8
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.3e-68 263.5 156 75.6
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 2.2e-68 262.7 175 70.9
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 2.2e-68 262.7 142 82.4
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 2.2e-68 262.7 153 79.7
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 4.8e-68 261.5 178 70.2
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 4.8e-68 261.5 142 81.0
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.8e-67 259.6 141 78.7
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 2.6e-66 255.8 156 75.6
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 7.7e-66 254.2 119 98.3
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.7e-65 253.1 160 72.5
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 2.9e-65 252.3 162 71.6
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 4.2e-64 248.4 140 75.7
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.2e-64 247.7 176 67.0
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.6e-63 246.5 140 74.3
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.8e-62 243.0 124 89.5
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 3.9e-62 241.9 159 74.2
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.1e-61 240.4 142 76.8
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.1e-61 240.4 126 85.7
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 2.5e-61 239.2 139 79.9
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 7.4e-61 237.7 184 61.4
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 1.7e-60 236.5 161 70.8
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 2.2e-60 236.1 129 85.3
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 3.7e-60 235.3 164 69.5
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 9.1e-59 230.7 127 80.3
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 7.7e-58 227.6 140 75.7
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.7e-57 226.5 160 71.2
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.4e-54 216.9 120 80.0
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.8e-54 216.5 140 66.4
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 2.0e-53 213.0 166 63.9
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 2.6e-53 212.6 148 67.6
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 2.2e-52 209.5 146 70.5
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 8.5e-49 197.6 105 85.7
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.1e-48 197.2 147 65.3
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 6.1e-47 191.4 99 85.9
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 6.5e-41 171.4 180 50.6
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.5e-41 171.4 142 54.2
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 4.2e-40 168.7 148 61.5
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 4.7e-39 165.2 166 48.8
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 8.0e-39 164.5 89 83.1
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.4e-38 163.7 140 55.7
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.4e-38 163.7 144 54.2
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 3.0e-38 162.5 87 83.9
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 4.0e-38 162.2 120 65.0
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 4.1e-35 152.1 180 46.1
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 3.8e-33 145.6 165 47.9
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.2e-31 140.6 183 39.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 1.5e-29 133.7 85 68.2
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.0e-29 133.3 72 86.1
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 7.5e-29 131.3 163 46.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.8e-27 126.7 70 84.3
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 7.7e-26 121.3 59 86.4
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 2.9e-25 119.4 147 42.9
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 1.2e-21 107.5 53 86.8
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.6e-21 106.3 118 44.9
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 5.4e-19 98.6 187 36.4
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 1.9e-16 90.1 86 51.2
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 7.5e-13 78.2 157 31.2
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 3.7e-12 75.9 120 40.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.6e-10 70.5 141 31.2
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 1.7e-09 67.0 31 87.1
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 3.0e-09 66.2 71 47.9
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 8.0e-07 58.2 64 43.8


User provided reference genes

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