Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G037730 Cucumis sativus L. HOM05D000133 ORTHO05D008574 2.0e-110 402.5 209 100.0
MELO3C017067.2 Cucumis melo HOM05D000133 ORTHO05D008574 4.3e-49 198.7 111 93.7
ClCG11G019140 Citrullus lanatus HOM05D000133 ORTHO05D008574 4.3e-41 172.2 111 83.8
Sed0015290 Sechium edule HOM05D000133 ORTHO05D008574 3.9e-26 122.5 99 68.7
GSVIVG01013450001 Vitis vinifera HOM05D000133 ORTHO05D008574 6.9e-23 111.7 111 60.4
Haze_22880 Corylus avellana HOM05D000133 ORTHO05D008574 1.0e-21 107.8 113 59.3
TWI36G0469 Tripterygium wilfordii HOM05D000133 ORTHO05D008574 2.2e-21 106.7 117 57.3
CiPaw.07G131000 Carya illinoinensis HOM05D000133 ORTHO05D008574 3.8e-21 105.9 111 64.0
Potri.005G258600 Populus trichocarpa HOM05D000133 ORTHO05D008574 3.8e-21 105.9 111 57.7
Cfa014158 Carpinus fangiana HOM05D000133 ORTHO05D008574 6.5e-21 105.1 74 75.7
TAR628G0159 Trochodendron aralioides HOM05D000133 ORTHO05D008574 6.5e-21 105.1 118 59.3
QL02p016048 Quercus lobata HOM05D000133 ORTHO05D008574 8.4e-21 104.8 122 58.2
Manes.15G159000 Manihot esculenta HOM05D000133 ORTHO05D008574 1.1e-20 104.4 112 56.2
Thecc.05G158800 Theobroma cacao HOM05D000133 ORTHO05D008574 2.5e-20 103.2 114 59.6
Gohir.A02G108200 Gossypium hirsutum HOM05D000133 ORTHO05D008574 3.2e-20 102.8 89 61.8
COL.COLO4_28212 Corchorus olitorius HOM05D000133 ORTHO05D008574 4.2e-20 102.4 99 60.6
Nn7g36295 Nelumbo nucifera HOM05D000133 ORTHO05D008574 4.2e-20 102.4 118 51.7
THA.LOC104812020 Tarenaya hassleriana HOM05D000133 ORTHO05D008574 1.2e-19 100.9 100 62.0
AL2G36710 Arabidopsis lyrata HOM05D000133 ORTHO05D008574 1.6e-19 100.5 111 57.7
Duzib128G2051 Durio zibethinus HOM05D000133 ORTHO05D008574 1.6e-19 100.5 84 66.7
VMungo0647G0158 Vigna mungo HOM05D000133 ORTHO05D008574 1.6e-19 100.5 114 54.4
Actinidia15547 Actinidia chinensis HOM05D000133 ORTHO05D008574 3.5e-19 99.4 103 58.3
Eucgr.F01826 Eucalyptus grandis HOM05D000133 ORTHO05D008574 4.6e-19 99.0 104 53.8
FvH4_5g26480 Fragaria vesca HOM05D000133 ORTHO05D008574 6.0e-19 98.6 92 58.7
Cpa.g.sc50.106 Carica papaya HOM05D000133 ORTHO05D008574 7.9e-19 98.2 111 55.0
Gohir.D03G068000 Gossypium hirsutum HOM05D000133 ORTHO05D008574 1.0e-18 97.8 84 64.3
FAN04G3030 Fragaria x ananassa HOM05D000133 ORTHO05D008574 1.3e-18 97.4 115 54.8
FAN18G1274 Fragaria x ananassa HOM05D000133 ORTHO05D008574 1.8e-18 97.1 92 57.6
FAN08G0937 Fragaria x ananassa HOM05D000133 ORTHO05D008574 2.3e-18 96.7 115 54.8
Phvul.001G000400 Phaseolus vulgaris HOM05D000133 ORTHO05D008574 2.3e-18 96.7 100 59.0
Rhsim06G0001500 Rhododendron simsii HOM05D000133 ORTHO05D008574 2.3e-18 96.7 98 60.2
Sp5g31730 Schrenkiella parvula HOM05D000133 ORTHO05D008574 2.3e-18 96.7 111 57.7
CSS0023573 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D008574 3.0e-18 96.3 99 55.6
FAN13G3062 Fragaria x ananassa HOM05D000133 ORTHO05D008574 3.0e-18 96.3 92 57.6
PGR083G0731 Punica granatum HOM05D000133 ORTHO05D008574 3.0e-18 96.3 65 72.3
Lalb_Chr03g0033711 Lupinus albus HOM05D000133 ORTHO05D008574 3.9e-18 95.9 115 52.2
AT1G76570 Arabidopsis thaliana HOM05D000133 ORTHO05D008574 5.1e-18 95.5 112 55.4
BraA02t07110Z Brassica rapa HOM05D000133 ORTHO05D008574 5.1e-18 95.5 111 56.8
HanXRQChr14g0427961 Helianthus annuus HOM05D000133 ORTHO05D008574 5.1e-18 95.5 65 72.3
CSS0033337 Camellia sinensis var. sinensis HOM05D000133 ORTHO05D008574 6.7e-18 95.1 99 54.5
CARHR070120 Cardamine hirsuta HOM05D000133 ORTHO05D008574 6.7e-18 95.1 114 57.0
Aa31LG4G6670 Aethionema arabicum HOM05D000133 ORTHO05D008574 1.1e-17 94.4 66 74.2
arahy.Tifrunner.gnm1.ann1.5CP0AS Arachis hypogaea HOM05D000133 ORTHO05D008574 1.1e-17 94.4 114 54.4
RcHm_v2.0_Chr7g0217391 Rosa chinensis HOM05D000133 ORTHO05D008574 1.1e-17 94.4 115 51.3
CANSAT25G0908 Cannabis sativa HOM05D000133 ORTHO05D008574 1.5e-17 94.0 74 63.5
Gorai.003G092700 Gossypium raimondii HOM05D000133 ORTHO05D008574 1.5e-17 94.0 93 59.1
Lj5g0024964 Lotus japonicus HOM05D000133 ORTHO05D008574 1.9e-17 93.6 66 72.7
Medtr1g026550 Medicago truncatula HOM05D000133 ORTHO05D008574 1.9e-17 93.6 111 54.1
Oeu030368.1 Olea europaea HOM05D000133 ORTHO05D008574 1.9e-17 93.6 84 61.9
Prupe.5G002700 Prunus persica HOM05D000133 ORTHO05D008574 1.9e-17 93.6 111 52.3
Ca_13498_v3 Cicer arietinum L. HOM05D000133 ORTHO05D008574 2.5e-17 93.2 98 55.1
Lsat_1_v5_gn_2_3220 Lactuca sativa HOM05D000133 ORTHO05D008574 2.5e-17 93.2 105 52.4
TPR.G26411 Trifolium pratense HOM05D000133 ORTHO05D008574 2.5e-17 93.2 105 56.2
Carub.0002s0674 Capsella rubella HOM05D000133 ORTHO05D008574 3.3e-17 92.8 66 74.2
Peaxi162Scf00385g00095 Petunia axillaris HOM05D000133 ORTHO05D008574 3.3e-17 92.8 86 60.5
BcaB05g24997 Brassica carinata HOM05D000133 ORTHO05D008574 5.7e-17 92.0 97 57.7
A02p20770 Brassica napus HOM05D000133 ORTHO05D008574 5.7e-17 92.0 66 72.7
BcaC03g15687 Brassica carinata HOM05D000133 ORTHO05D008574 7.4e-17 91.7 66 71.2
C02p32890 Brassica napus HOM05D000133 ORTHO05D008574 7.4e-17 91.7 66 71.2
BolC2t09410H Brassica oleracea HOM05D000133 ORTHO05D008574 7.4e-17 91.7 66 71.2
Lj4A813T62 Lonicera japonica HOM05D000133 ORTHO05D008574 9.6e-17 91.3 63 76.2
arahy.Tifrunner.gnm1.ann1.FPQS3Q Arachis hypogaea HOM05D000133 ORTHO05D008574 1.3e-16 90.9 114 54.4
ECA238G4093 Erigeron canadensis HOM05D000133 ORTHO05D008574 1.6e-16 90.5 67 67.2
Glyma.17G262400 Glycine max HOM05D000133 ORTHO05D008574 1.6e-16 90.5 111 51.4
Nitab4.5_0009514g0080 Nicotiana tabacum HOM05D000133 ORTHO05D008574 3.7e-16 89.4 95 57.9
Hma1.2p1_0914F.1_g236130 Hydrangea macrophylla HOM05D000133 ORTHO05D008574 4.8e-16 89.0 102 51.0
Ciclev10006886m.g Citrus clementina HOM05D000133 ORTHO05D008574 8.2e-16 88.2 118 49.2
CAN.G1330.27 Capsicum annuum HOM05D000133 ORTHO05D008574 1.8e-15 87.0 98 54.1
PGSC0003DMG401009929 Solanum tuberosum HOM05D000133 ORTHO05D008574 1.8e-15 87.0 74 63.5
Psat6g000800 Pisum sativum HOM05D000133 ORTHO05D008574 2.4e-15 86.7 111 53.2
vmacro21742 Vaccinium macrocarpon HOM05D000133 ORTHO05D008574 4.0e-15 85.9 65 72.3
MSTRG.24529 Avicennia marina HOM05D000133 ORTHO05D008574 5.3e-15 85.5 79 60.8
Cc10_g00140 Coffea canephora HOM05D000133 ORTHO05D008574 5.3e-15 85.5 114 52.6
Hund05066 Selenicereus undatus HOM05D000133 ORTHO05D008574 5.3e-15 85.5 115 50.4
SalBow6G0629 Salvia bowleyana HOM05D000133 ORTHO05D008574 6.9e-15 85.1 77 58.4
Aqoxy6G03043 Aquilegia oxysepala HOM05D000133 ORTHO05D008574 9.0e-15 84.7 65 72.3
MD06G1001700 Malus domestica HOM05D000133 ORTHO05D008574 9.0e-15 84.7 63 69.8
PSO675G8603 Papaver somniferum HOM05D000133 ORTHO05D008574 1.5e-14 84.0 106 50.0
Sopen04g036560 Solanum pennellii HOM05D000133 ORTHO05D008574 1.5e-14 84.0 74 62.2
Sabra05G0200200 Salix brachista HOM05D000133 ORTHO05D008574 2.0e-14 83.6 70 67.1
PSO541G6038 Papaver somniferum HOM05D000133 ORTHO05D008574 2.6e-14 83.2 106 49.1
CDE05G0052 Ceratophyllum demersum HOM05D000133 ORTHO05D008574 4.5e-14 82.4 108 50.0
DCAR_000466 Daucus carota HOM05D000133 ORTHO05D008574 4.5e-14 82.4 62 66.1
DCAR_003080 Daucus carota HOM05D000133 ORTHO05D008574 4.5e-14 82.4 62 66.1
Migut.N02998 Erythranthe guttata HOM05D000133 ORTHO05D008574 1.3e-13 80.9 79 59.5
unitig_8.g3346 Utricularia gibba HOM05D000133 ORTHO05D008574 3.8e-13 79.3 66 62.1
SEGI_19202 Sequoiadendron giganteum HOM05D000133 ORTHO05D008574 8.4e-13 78.2 86 53.5
Actinidia17091 Actinidia chinensis HOM05D000133 ORTHO05D008574 1.1e-12 77.8 56 73.2
HPP92_021696 Vanilla planifolia HOM05D000133 ORTHO05D008574 1.1e-12 77.8 74 56.8
EL10Ac1g01847 Beta vulgaris HOM05D000133 ORTHO05D008574 2.5e-12 76.6 116 48.3
THA.LOC104819519 Tarenaya hassleriana HOM05D007323 ORTHO05D009238 2.5e-12 76.6 65 61.5
Zm00001eb309200 Zea mays HOM05D000133 ORTHO05D008574 2.5e-12 76.6 62 62.9
ATR0605G395 Amborella trichopoda HOM05D000133 ORTHO05D008574 5.5e-12 75.5 111 44.1
HPP92_021707 Vanilla planifolia HOM05D000133 ORTHO05D008574 5.5e-12 75.5 61 65.6
Os09g0296800 Oryza sativa ssp. japonica HOM05D000133 ORTHO05D008574 7.1e-12 75.1 62 59.7
Sc26g0004740 Simmondsia chinensis HOM05D000133 ORTHO05D008574 7.9e-11 71.6 62 64.5
Ah.11g042280 Amaranthus hybridus HOM05D000133 ORTHO05D008574 1.0e-10 71.2 80 51.2
AUR62042536 Chenopodium quinoa HOM05D000133 ORTHO05D008574 1.8e-10 70.5 76 53.9
AUR62035189 Chenopodium quinoa HOM05D000133 ORTHO05D008574 2.3e-10 70.1 76 53.9
SGA_v2.0_scaffold220G42607 Striga asiatica HOM05D000133 ORTHO05D008574 6.7e-10 68.6 57 63.2
SMO174G0043 Selaginella moellendorffii HOM05D000133 ORTHO05D008574 1.1e-09 67.8 64 57.8
AagrBONN_evm.TU.Sc2ySwM_228.5487 Anthoceros agrestis HOM05D000133 ORTHO05D008574 1.9e-09 67.0 63 52.4
Mapoly0008s0015 Marchantia polymorpha HOM05D000133 ORTHO05D008574 1.3e-08 64.3 65 52.3


User provided reference genes

Program Settings