Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G037440 Cucumis sativus L. HOM05D007018 ORTHO05D008887 3.3e-101 371.7 185 100.0
MELO3C017041.2 Cucumis melo HOM05D007018 ORTHO05D008887 3.5e-95 351.7 185 94.1
Sed0005335 Sechium edule HOM05D007018 ORTHO05D008887 7.1e-88 327.4 183 89.6
ClCG11G018850 Citrullus lanatus HOM05D007018 ORTHO05D008887 1.2e-82 310.1 186 87.1
CANSAT25G2394 Cannabis sativa HOM05D007018 ORTHO05D008887 2.4e-72 275.8 180 76.7
QL02p015150 Quercus lobata HOM05D007018 ORTHO05D008887 2.4e-72 275.8 180 77.2
Haze_22833 Corylus avellana HOM05D007018 ORTHO05D008887 2.7e-71 272.3 184 76.6
Potri.005G253600 Populus trichocarpa HOM05D007018 ORTHO05D008887 2.7e-71 272.3 185 74.6
CiPaw.08G075600 Carya illinoinensis HOM05D007018 ORTHO05D008887 7.9e-71 270.8 181 77.3
Dinv31968 Davidia involucrata HOM05D007018 ORTHO05D008887 1.1e-69 266.9 182 76.4
GSVIVG01013398001 Vitis vinifera HOM05D007018 ORTHO05D008887 1.5e-69 266.5 182 74.7
Nn5g31007 Nelumbo nucifera HOM05D007018 ORTHO05D008887 1.3e-68 263.5 183 72.7
TWI36G0062 Tripterygium wilfordii HOM05D007018 ORTHO05D008887 1.6e-68 263.1 184 75.0
RcHm_v2.0_Chr7g0215941 Rosa chinensis HOM05D007018 ORTHO05D008887 2.8e-68 262.3 181 75.7
Sabra02G0005900 Salix brachista HOM05D007018 ORTHO05D008887 2.8e-68 262.3 182 74.7
Sabra05G0196700 Salix brachista HOM05D007018 ORTHO05D008887 2.8e-68 262.3 183 73.8
Actinidia17062 Actinidia chinensis HOM05D007018 ORTHO05D008887 6.2e-68 261.2 170 78.8
CSS0014140 Camellia sinensis var. sinensis HOM05D007018 ORTHO05D008887 1.4e-67 260.0 178 74.7
Aqoxy6G01596 Aquilegia oxysepala HOM05D007018 ORTHO05D008887 2.4e-67 259.2 193 68.4
Hma1.2p1_0699F.1_g205550 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.4e-67 259.2 180 71.7
DCAR_022937 Daucus carota HOM05D007018 ORTHO05D008887 4.0e-67 258.5 170 76.5
SGA_v2.0_scaffold366G50030 Striga asiatica HOM05D007018 ORTHO05D008887 5.3e-67 258.1 179 72.6
Sc26g0004680 Simmondsia chinensis HOM05D007018 ORTHO05D008887 6.9e-67 257.7 179 74.9
Prupe.5G008700 Prunus persica HOM05D007018 ORTHO05D008887 1.2e-66 256.9 178 74.7
TAR625G1418 Trochodendron aralioides HOM05D007018 ORTHO05D008887 2.6e-66 255.8 187 72.2
FAN04G0342 Fragaria x ananassa HOM05D007018 ORTHO05D008887 4.5e-66 255.0 181 72.9
TAR633G0270 Trochodendron aralioides HOM05D007018 ORTHO05D008887 4.5e-66 255.0 187 71.1
FAN13G0505 Fragaria x ananassa HOM05D007018 ORTHO05D008887 7.6e-66 254.2 181 72.9
FAN08G2873 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.2e-65 252.7 181 72.4
FAN18G2290 Fragaria x ananassa HOM05D007018 ORTHO05D008887 2.2e-65 252.7 183 73.2
Lj4A809G49 Lonicera japonica HOM05D007018 ORTHO05D008887 2.9e-65 252.3 165 75.8
FvH4_5g25650 Fragaria vesca HOM05D007018 ORTHO05D008887 4.9e-65 251.5 183 72.7
Gohir.D01G088700 Gossypium hirsutum HOM05D007018 ORTHO05D008887 1.1e-64 250.4 171 73.7
VMungo1309G2102 Vigna mungo HOM05D007018 ORTHO05D008887 1.9e-64 249.6 176 73.3
Glyma.06G016200 Glycine max HOM05D007018 ORTHO05D008887 2.4e-64 249.2 177 74.0
PSO541G4149 Papaver somniferum HOM05D007018 ORTHO05D008887 7.1e-64 247.7 181 71.8
Atru.chr13.101 Acer truncatum HOM05D007018 ORTHO05D008887 9.3e-64 247.3 175 72.0
Duzib093G1136 Durio zibethinus HOM05D007018 ORTHO05D008887 9.3e-64 247.3 176 72.2
Migut.C00367 Erythranthe guttata HOM05D007018 ORTHO05D008887 9.3e-64 247.3 180 69.4
MSTRG.993 Avicennia marina HOM05D007018 ORTHO05D008887 1.6e-63 246.5 182 69.8
PGR083G2064 Punica granatum HOM05D007018 ORTHO05D008887 1.6e-63 246.5 179 71.5
CAN.G311.135 Capsicum annuum HOM05D007018 ORTHO05D008887 2.1e-63 246.1 167 73.1
Gorai.002G114400 Gossypium raimondii HOM05D007018 ORTHO05D008887 2.1e-63 246.1 171 73.1
Lalb_Chr11g0061471 Lupinus albus HOM05D007018 ORTHO05D008887 2.7e-63 245.7 178 70.8
Rhsim06G0005000 Rhododendron simsii HOM05D007018 ORTHO05D008887 3.5e-63 245.4 180 70.0
Gohir.A01G103400 Gossypium hirsutum HOM05D007018 ORTHO05D008887 4.6e-63 245.0 179 72.1
MD06G1006600 Malus domestica HOM05D007018 ORTHO05D008887 6.0e-63 244.6 177 71.8
Ciclev10002616m.g Citrus clementina HOM05D007018 ORTHO05D008887 1.3e-62 243.4 178 70.8
Lsat_1_v5_gn_8_27360 Lactuca sativa HOM05D007018 ORTHO05D008887 1.8e-62 243.0 177 69.5
Phvul.009G006300 Phaseolus vulgaris HOM05D007018 ORTHO05D008887 1.8e-62 243.0 176 72.2
Eucgr.F01791 Eucalyptus grandis HOM05D007018 ORTHO05D008887 3.0e-62 242.3 178 68.5
CDE05G1284 Ceratophyllum demersum HOM05D007018 ORTHO05D008887 3.9e-62 241.9 174 69.0
HanXRQChr08g0216381 Helianthus annuus HOM05D007018 ORTHO05D008887 5.1e-62 241.5 177 67.8
Lj1g0008636 Lotus japonicus HOM05D007018 ORTHO05D008887 8.7e-62 240.7 180 68.9
TPR.G38107 Trifolium pratense HOM05D007018 ORTHO05D008887 1.9e-61 239.6 180 70.0
PGSC0003DMG400009913 Solanum tuberosum HOM05D007018 ORTHO05D008887 9.6e-61 237.3 183 66.1
ECA233G6114 Erigeron canadensis HOM05D000716 ORTHO05D002658 2.1e-60 236.1 178 66.9
Cc04_g01910 Coffea canephora HOM05D007018 ORTHO05D008887 2.8e-60 235.7 179 68.7
Thhalv10004993m.g Eutrema salsugineum HOM05D007018 ORTHO05D008887 1.1e-59 233.8 176 64.8
Peaxi162Scf00680g00121 Petunia axillaris HOM05D007018 ORTHO05D008887 1.4e-59 233.4 180 68.3
arahy.Tifrunner.gnm1.ann1.UKS4G3 Arachis hypogaea HOM05D007018 ORTHO05D008887 2.4e-59 232.6 179 67.6
arahy.Tifrunner.gnm1.ann1.R1PR4F Arachis hypogaea HOM05D007018 ORTHO05D008887 4.0e-59 231.9 179 67.6
Sp1g32030 Schrenkiella parvula HOM05D007018 ORTHO05D008887 4.0e-59 231.9 147 72.8
Solyc04g082590.3 Solanum lycopersicum HOM05D007018 ORTHO05D008887 4.0e-59 231.9 175 68.0
Sopen04g036220 Solanum pennellii HOM05D007018 ORTHO05D008887 4.0e-59 231.9 173 67.1
Medtr3g115880 Medicago truncatula HOM05D007018 ORTHO05D008887 5.3e-59 231.5 184 66.3
CARHR292440 Cardamine hirsuta HOM05D007018 ORTHO05D008887 9.0e-59 230.7 178 62.9
unitig_749.g13890 Utricularia gibba HOM05D007018 ORTHO05D008887 1.2e-58 230.3 177 64.4
AT1G42480 Arabidopsis thaliana HOM05D007018 ORTHO05D008887 4.5e-58 228.4 180 61.7
Psat5g009640 Pisum sativum HOM05D007018 ORTHO05D008887 4.5e-58 228.4 165 70.9
AL1G51350 Arabidopsis lyrata HOM05D007018 ORTHO05D008887 1.3e-57 226.9 164 66.5
Carub.0001s3428 Capsella rubella HOM05D007018 ORTHO05D008887 1.3e-57 226.9 164 66.5
BcaB04g17781 Brassica carinata HOM05D007018 ORTHO05D008887 1.7e-57 226.5 147 70.7
A08p07720 Brassica napus HOM05D007018 ORTHO05D008887 3.8e-57 225.3 166 64.5
BraA08t32785Z Brassica rapa HOM05D007018 ORTHO05D008887 3.8e-57 225.3 166 64.5
BcaC07g37460 Brassica carinata HOM05D007018 ORTHO05D008887 8.4e-57 224.2 166 63.9
C08p09340 Brassica napus HOM05D007018 ORTHO05D008887 8.4e-57 224.2 166 63.9
BolC8t47779H Brassica oleracea HOM05D007018 ORTHO05D008887 1.1e-56 223.8 166 63.9
HPP92_012484 Vanilla planifolia HOM05D007018 ORTHO05D008887 1.1e-56 223.8 190 63.2
vmacro21785 Vaccinium macrocarpon HOM05D007018 ORTHO05D008887 1.4e-56 223.4 241 52.3
THA.LOC104806916 Tarenaya hassleriana HOM05D007018 ORTHO05D008887 1.2e-55 220.3 162 65.4
Manes.18G003600 Manihot esculenta HOM05D007018 ORTHO05D008887 2.1e-55 219.5 181 64.6
Hma1.2p1_0699F.1_g205540 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 2.7e-55 219.2 144 75.7
ATR0807G118 Amborella trichopoda HOM05D007018 ORTHO05D008887 7.9e-55 217.6 134 79.1
Aa31sc108G20 Aethionema arabicum HOM05D007018 ORTHO05D008887 4.3e-53 211.8 166 62.7
Actinidia15510 Actinidia chinensis HOM05D007018 ORTHO05D008887 1.1e-51 207.2 136 78.7
Os02g0117200 Oryza sativa ssp. japonica HOM05D007018 ORTHO05D008887 5.3e-51 204.9 171 59.1
Zm00001eb209390 Zea mays HOM05D007018 ORTHO05D008887 1.5e-50 203.4 175 59.4
SalBow7G2934 Salvia bowleyana HOM05D007018 ORTHO05D008887 2.0e-50 203.0 141 73.8
Manes.13G069000 Manihot esculenta HOM05D007018 ORTHO05D008887 4.5e-50 201.8 135 74.1
Thecc.08G062700 Theobroma cacao HOM05D007018 ORTHO05D008887 4.5e-50 201.8 132 77.3
COL.COLO4_37754 Corchorus olitorius HOM05D007018 ORTHO05D008887 9.3e-48 194.1 139 71.2
AUR62035144 Chenopodium quinoa HOM05D007018 ORTHO05D008887 1.4e-43 180.3 177 57.1
Ca_15400_v3 Cicer arietinum L. HOM05D007018 ORTHO05D008887 5.9e-42 174.9 123 68.3
Pp3c3_21490 Physcomitrium patens HOM05D007018 ORTHO05D008887 1.0e-41 174.1 179 50.8
EL10Ac1g01910 Beta vulgaris HOM05D007018 ORTHO05D008887 1.7e-41 173.3 150 62.7
AUR62042577 Chenopodium quinoa HOM05D007018 ORTHO05D008887 2.3e-38 162.9 156 57.7
Nitab4.5_0009646g0030 Nicotiana tabacum HOM05D007018 ORTHO05D008887 5.1e-38 161.8 197 47.7
HPP92_001689 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.8e-36 156.0 159 49.1
Glyma.04G016200 Glycine max HOM05D007018 ORTHO05D008887 2.6e-29 132.9 101 71.3
Prupe.5G008600 Prunus persica HOM05D007018 ORTHO05D008887 2.2e-28 129.8 82 74.4
Cre16.g661700 Chlamydomonas reinhardtii HOM05D007018 ORTHO05D008887 2.8e-28 129.4 183 43.2
Hund05090 Selenicereus undatus HOM05D007018 ORTHO05D008887 1.3e-25 120.6 126 52.4
Hma1.2p1_0699F.1_g205580 Hydrangea macrophylla HOM05D007018 ORTHO05D008887 7.2e-24 114.8 87 66.7
MCO14G410 Micromonas commoda HOM05D007018 ORTHO05D008887 9.4e-24 114.4 159 37.7
AUR62042580 Chenopodium quinoa HOM05D007018 ORTHO05D008887 3.6e-23 112.5 157 45.9
Potri.002G007601 Populus trichocarpa HOM05D007018 ORTHO05D008887 1.3e-20 104.0 74 71.6
AagrBONN_evm.TU.Sc2ySwM_228.4250 Anthoceros agrestis HOM05D007018 ORTHO05D008887 1.7e-20 103.6 78 61.5
PRCOL_00006317 Prasinoderma coloniale HOM05D007018 ORTHO05D008887 1.4e-19 100.5 141 40.4
SEGI_04341 Sequoiadendron giganteum HOM05D007018 ORTHO05D008887 5.2e-14 82.0 61 59.0
SHI07963 Sapria himalayana HOM05D007018 ORTHO05D008887 3.8e-09 65.9 40 75.0
HPP92_012557 Vanilla planifolia HOM05D007018 ORTHO05D008887 2.8e-07 59.7 76 47.4


User provided reference genes

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