Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 4.6e-119 431.4 246 100.0
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 2.1e-95 352.8 230 88.3
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 7.5e-85 317.8 277 66.8
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 2.0e-82 309.7 232 73.7
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 8.9e-46 188.0 192 58.9
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 4.4e-45 185.7 200 53.5
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 5.8e-45 185.3 205 54.1
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.3e-44 184.1 188 59.0
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 1.7e-44 183.7 196 58.2
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 2.2e-44 183.3 211 54.0
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 6.4e-44 181.8 213 54.9
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 6.4e-44 181.8 188 56.9
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 6.4e-44 181.8 205 53.2
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 1.2e-42 177.6 201 56.7
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.5e-42 176.0 197 52.8
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 3.5e-42 176.0 198 52.5
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 7.8e-42 174.9 190 53.2
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 1.0e-41 174.5 194 52.1
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 2.3e-41 173.3 195 53.3
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 6.6e-41 171.8 191 56.0
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 4.3e-40 169.1 198 53.5
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 7.3e-40 168.3 189 51.9
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 7.3e-40 168.3 190 52.6
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 1.6e-39 167.2 189 52.4
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 2.1e-39 166.8 189 57.7
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 3.6e-39 166.0 187 51.9
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.7e-39 165.6 194 50.0
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 4.7e-39 165.6 163 62.0
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 4.7e-39 165.6 197 50.3
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 6.2e-39 165.2 187 55.6
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 6.2e-39 165.2 186 51.6
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.4e-38 164.1 187 55.1
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.4e-38 164.1 186 51.1
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.4e-38 164.1 200 49.0
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 1.8e-38 163.7 204 46.1
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 3.1e-38 162.9 187 50.3
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 4.0e-38 162.5 191 50.8
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 5.2e-38 162.2 190 52.6
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 6.8e-38 161.8 200 49.5
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 6.8e-38 161.8 191 51.3
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 8.9e-38 161.4 205 50.2
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 1.2e-37 161.0 193 51.3
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.2e-37 161.0 194 53.6
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.2e-37 161.0 222 46.8
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.2e-37 161.0 195 45.6
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.5e-37 160.6 187 50.8
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 2.0e-37 160.2 200 46.5
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 2.6e-37 159.8 187 50.3
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 2.6e-37 159.8 187 50.8
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 2.6e-37 159.8 187 50.3
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 2.6e-37 159.8 188 48.9
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 3.4e-37 159.5 193 50.8
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 3.4e-37 159.5 196 49.5
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.4e-37 159.1 194 53.1
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 5.8e-37 158.7 202 47.5
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 5.8e-37 158.7 199 52.3
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 5.8e-37 158.7 189 50.8
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 7.6e-37 158.3 183 55.2
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 9.9e-37 157.9 194 52.6
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.7e-36 157.1 194 53.1
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 1.7e-36 157.1 202 48.5
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 2.9e-36 156.4 186 50.5
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 2.9e-36 156.4 197 49.2
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 3.8e-36 156.0 189 49.7
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 3.8e-36 156.0 166 59.6
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 3.8e-36 156.0 193 51.8
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 4.9e-36 155.6 194 53.1
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 4.9e-36 155.6 187 49.2
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 6.4e-36 155.2 186 48.9
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 6.4e-36 155.2 186 50.0
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 6.4e-36 155.2 201 48.8
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.9e-35 153.7 205 43.9
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.9e-35 153.7 205 50.7
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 2.4e-35 153.3 187 49.7
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 3.2e-35 152.9 200 47.0
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 3.2e-35 152.9 202 48.0
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 4.1e-35 152.5 190 48.9
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 5.4e-35 152.1 193 47.7
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 5.4e-35 152.1 188 51.1
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 5.4e-35 152.1 195 47.7
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 7.1e-35 151.8 216 44.4
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 7.1e-35 151.8 194 47.4
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 1.2e-34 151.0 194 46.9
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 2.1e-34 150.2 193 46.6
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 2.1e-34 150.2 195 46.2
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 3.5e-34 149.4 212 43.4
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 3.5e-34 149.4 197 45.7
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 4.6e-34 149.1 195 47.7
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 1.0e-33 147.9 197 46.7
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.7e-33 147.1 190 46.3
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.7e-33 147.1 190 46.3
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 2.3e-33 146.7 190 50.5
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 8.6e-33 144.8 192 44.3
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 1.9e-32 143.7 201 44.8
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.9e-32 143.7 189 47.1
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 2.5e-32 143.3 183 46.4
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 4.3e-32 142.5 165 54.5
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 4.3e-32 142.5 188 48.4
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 2.8e-31 139.8 199 46.2
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 2.8e-31 139.8 192 43.2
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 2.4e-30 136.7 188 46.3
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 3.1e-30 136.3 167 49.1
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 5.2e-30 135.6 236 40.3
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 8.9e-30 134.8 204 44.6
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 7.6e-29 131.7 187 42.2
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.9e-28 129.8 192 40.6
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 2.9e-28 129.8 204 45.6
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 1.3e-25 120.9 186 39.8
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.6e-23 114.0 200 41.0
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 3.4e-21 106.3 123 47.2
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 5.4e-19 99.0 165 38.8
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 2.1e-18 97.1 108 49.1
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.9e-16 90.5 86 55.8
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 2.8e-15 86.7 111 47.7
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 5.8e-13 79.0 86 54.7
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 9.9e-13 78.2 73 57.5
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 9.9e-13 78.2 92 51.1
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 4.9e-12 75.9 216 31.5
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 2.4e-11 73.6 280 28.6
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 6.0e-10 68.9 204 33.3
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.8e-09 67.4 137 35.0
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 8.7e-09 65.1 59 59.3
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 6.9e-06 55.5 40 67.5


User provided reference genes

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