Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 2021.9 1032 100.0
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1971.4 1032 97.9
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1924.4 1032 95.5
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1856.6 1033 91.5
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1648.3 1039 80.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1647.5 1039 80.1
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1627.1 1036 79.6
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1615.1 1040 78.8
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1615.1 1040 78.7
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1607.8 1128 72.9
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1604.3 1040 78.8
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1598.6 1040 78.2
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1596.3 1038 77.7
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1595.1 1038 77.7
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1594.7 1038 77.8
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1590.1 1039 78.0
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1588.9 1035 77.8
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1587.4 1036 78.3
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1587.0 1039 77.7
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1587.0 1035 77.6
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1585.1 1037 78.4
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1585.1 1039 78.1
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1583.9 1040 78.0
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1581.6 1039 77.8
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1580.8 1043 77.8
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1580.1 1055 76.8
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1577.4 1055 76.9
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1576.2 1032 76.9
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1575.1 1040 77.6
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1573.1 1038 77.5
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1570.4 1055 76.3
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1561.2 1037 77.0
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1560.8 1037 76.7
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1560.4 1032 76.6
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1557.3 1040 75.8
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1555.8 1032 76.6
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1553.9 1040 75.8
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1550.8 1032 76.4
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1548.1 1081 73.7
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1548.1 1081 73.7
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1546.9 1041 76.1
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1543.5 1041 75.3
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1540.0 1034 75.8
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1535.0 1040 75.1
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1534.2 1040 75.0
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1533.9 1038 75.7
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1533.9 1036 76.1
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1531.2 1038 75.6
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1526.1 1036 75.1
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1522.7 1040 74.2
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1521.5 1042 74.9
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1518.8 1031 74.9
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1518.4 963 80.1
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1517.3 1032 74.9
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1517.3 1032 74.9
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1515.0 1031 74.9
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1514.6 1037 74.4
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1514.2 1031 74.8
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1511.9 1031 74.5
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1511.5 1040 73.4
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1511.5 1057 74.0
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1508.0 1037 74.1
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1505.3 1032 73.4
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1505.3 1032 74.3
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1505.3 1118 71.0
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1504.2 1033 75.0
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1502.6 1073 73.1
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1500.7 983 77.5
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1496.9 1040 74.2
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1496.1 1031 73.9
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1495.3 1041 73.2
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1488.0 1036 73.0
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1486.5 1036 73.6
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1484.9 1035 73.6
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1484.9 1041 73.5
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1481.8 1033 73.7
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1481.8 1037 73.6
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1481.5 1033 73.9
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1473.8 983 76.1
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1464.1 1180 66.5
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1461.8 1034 73.3
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1461.4 1033 72.5
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1456.4 1040 72.3
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1450.6 930 79.4
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1448.7 1048 71.0
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1434.9 991 73.3
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1417.5 1028 71.6
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1397.9 1037 70.1
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1396.7 1048 69.0
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1379.0 1048 69.6
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1366.7 1033 69.7
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1358.6 1036 68.0
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1351.7 899 75.9
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1331.2 1039 65.9
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1328.2 1037 66.2
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1322.8 933 72.2
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1318.5 1035 67.9
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1315.4 848 78.7
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1307.7 1044 65.1
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1234.6 857 73.9
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1099.3 1057 57.0
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 8.5e-311 1070.5 663 81.9
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 5.7e-304 1047.7 1063 53.9
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 3.0e-284 982.2 702 70.9
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.3e-275 951.8 739 67.8
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 4.7e-258 895.2 1026 50.4
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 6.2e-258 894.8 1026 50.3
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.5e-222 776.5 1029 43.8
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 1.5e-211 740.7 1158 41.2
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.1e-201 706.1 1017 43.5
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 2.8e-194 683.3 424 80.7
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.2e-182 642.9 978 41.9
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.2e-165 588.2 354 87.0
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 1.2e-157 561.6 432 67.1
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.9e-153 547.7 487 61.6
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 5.6e-150 536.2 747 43.9
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 6.0e-128 463.0 351 68.4
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 1.1e-113 415.6 328 68.0
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.1e-100 370.9 361 54.6
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 3.6e-96 357.5 313 60.4
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 4.1e-92 344.0 392 50.3
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 6.7e-87 326.6 291 54.0
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.5e-83 314.3 240 68.3
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.7e-74 285.4 159 90.6
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 5.0e-66 257.3 141 90.8
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 5.2e-63 247.3 160 80.6
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 8.3e-61 240.0 271 51.3
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 2.1e-56 225.3 159 70.4
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 2.2e-45 188.7 103 92.2
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 5.4e-44 184.1 117 72.6
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.0e-42 179.9 117 80.3
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.3e-41 174.5 164 54.3
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.2e-40 172.9 145 62.8
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 9.2e-36 156.8 196 48.5
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.9e-34 151.4 255 40.4
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 3.6e-32 144.8 161 51.6
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 4.7e-32 144.4 86 83.7
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 5.6e-25 120.9 164 42.1
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 2.1e-19 102.4 545 24.8
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 6.0e-19 100.9 61 73.8
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.6e-18 97.4 74 60.8
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.0e-14 85.9 245 30.6
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 1.9e-12 79.3 47 72.3
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 9.3e-12 77.0 60 71.7
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 9.3e-12 77.0 70 68.6
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 9.3e-12 77.0 70 68.6
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 4.3e-09 68.2 38 78.9
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.6e-06 58.9 102 38.2


User provided reference genes

Program Settings