Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 8.5e-66 253.4 121 100.0
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 1.4e-31 139.8 79 84.8
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 5.2e-31 137.9 79 82.3
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 5.2e-31 137.9 79 82.3
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 5.2e-31 137.9 79 82.3
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 5.2e-31 137.9 79 82.3
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 6.8e-31 137.5 77 84.4
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 1.2e-30 136.7 67 95.5
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 1.2e-30 136.7 67 95.5
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 5.7e-30 134.4 67 94.0
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 2.2e-29 132.5 67 92.5
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.7e-29 131.7 67 92.5
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.7e-29 131.7 67 92.5
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 1.2e-27 126.7 67 91.0
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 1.7e-26 122.9 67 86.6
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 1.6e-24 116.3 65 84.6
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 2.1e-24 115.9 77 75.3
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 2.8e-24 115.5 66 80.3
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 6.2e-24 114.4 66 81.8
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.0e-23 113.6 59 89.8
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.1e-23 112.1 67 82.1
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 5.8e-22 107.8 59 88.1
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 5.8e-22 107.8 59 88.1
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 5.8e-22 107.8 59 88.1
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 5.8e-22 107.8 59 88.1
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 5.8e-22 107.8 59 88.1
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 7.5e-22 107.5 61 86.9
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 3.7e-21 105.1 73 74.0
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 1.4e-20 103.2 76 71.1
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.9e-20 102.8 50 96.0
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 3.5e-19 98.6 52 90.4
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 1.3e-18 96.7 49 93.9
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 2.3e-18 95.9 58 81.0
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 9.5e-17 90.5 76 57.9
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 6.2e-16 87.8 43 93.0
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.1e-15 85.5 63 69.8
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.0e-15 85.1 68 64.7
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 5.8e-14 81.3 50 76.0
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 2.9e-13 79.0 42 88.1
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 6.4e-13 77.8 52 71.2
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 3.2e-12 75.5 40 87.5
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 7.8e-11 70.9 40 90.0
Gorai.008G144300 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.3e-10 70.1 44 72.7
TPR.G8529 Trifolium pratense HOM05D000060 ORTHO05D000082 3.0e-10 68.9 54 66.7
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 5.1e-10 68.2 40 80.0
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.2e-08 63.5 69 47.8
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.6e-08 63.2 69 47.8
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 4.7e-08 61.6 31 90.3
Gohir.A12G129550 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.4e-07 60.1 84 41.7


User provided reference genes

Program Settings