Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 3.2e-100 368.6 212 100.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.4e-95 353.2 212 96.2
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 5.4e-92 341.3 212 95.3
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.7e-82 309.7 210 77.1
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 9.3e-68 260.8 206 73.8
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 1.3e-66 256.9 206 74.3
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.5e-65 253.4 206 65.5
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.8e-64 248.4 206 64.1
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 1.1e-63 247.3 206 65.0
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.4e-63 246.1 207 65.7
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.1e-63 245.7 207 65.7
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 4.1e-63 245.4 206 66.0
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 9.0e-63 244.2 208 64.4
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.2e-62 243.8 206 62.6
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.7e-61 240.0 206 62.1
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 2.2e-61 239.6 198 62.6
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 5.0e-61 238.4 212 61.3
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 5.0e-61 238.4 212 61.3
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.1e-60 237.3 206 63.6
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 9.3e-60 234.2 200 62.5
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 6.1e-59 231.5 206 60.2
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.3e-58 230.3 206 58.7
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 5.1e-58 228.4 198 62.1
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.9e-57 226.5 189 62.4
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.9e-57 226.5 207 59.9
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.3e-57 225.7 207 59.9
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 4.3e-57 225.3 201 60.2
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 4.3e-57 225.3 204 60.3
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 2.8e-56 222.6 199 59.8
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.8e-56 222.6 208 58.2
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 3.7e-56 222.2 183 63.4
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 4.8e-56 221.9 207 58.5
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 6.3e-56 221.5 213 56.8
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 9.0e-55 217.6 213 55.9
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.5e-54 216.9 189 61.4
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.4e-54 215.7 187 62.6
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.9e-54 214.9 197 59.4
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.7e-53 213.4 196 67.9
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 8.5e-53 211.1 192 59.4
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 2.5e-52 209.5 203 54.7
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 2.5e-52 209.5 204 54.9
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 5.5e-52 208.4 196 57.1
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 7.2e-52 208.0 189 57.7
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 3.6e-51 205.7 202 55.0
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 4.6e-51 205.3 198 62.1
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 6.1e-51 204.9 202 55.0
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 7.9e-51 204.5 196 58.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 7.9e-51 204.5 192 56.8
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.8e-50 203.4 196 55.6
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.1e-50 201.8 206 53.9
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 6.7e-50 201.4 199 55.3
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.1e-49 200.7 201 54.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.1e-49 200.7 204 52.5
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.1e-49 200.7 188 55.9
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.5e-49 200.3 196 57.1
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.5e-49 199.5 190 55.3
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 5.7e-49 198.4 197 53.8
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 4.8e-48 195.3 206 52.9
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 4.8e-48 195.3 204 51.0
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 8.2e-48 194.5 190 53.7
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 1.8e-47 193.4 206 50.5
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.8e-47 193.4 206 52.4
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 1.8e-47 193.4 178 60.7
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 4.1e-47 192.2 212 52.8
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 9.1e-47 191.0 199 59.3
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.2e-46 190.7 203 49.3
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.5e-46 190.3 203 47.8
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 2.6e-46 189.5 201 54.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 3.4e-46 189.1 206 51.5
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.7e-45 186.8 199 51.8
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 8.5e-45 184.5 198 53.5
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.9e-44 183.3 135 67.4
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.9e-44 183.3 212 49.1
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.2e-44 182.6 196 53.6
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 3.2e-44 182.6 203 46.3
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 7.2e-44 181.4 190 53.7
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.6e-43 180.3 135 65.9
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.1e-43 179.9 213 48.8
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 2.1e-43 179.9 198 56.1
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.6e-43 179.1 198 49.0
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 7.9e-43 177.9 194 52.6
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.0e-42 177.6 210 55.2
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.0e-42 177.6 199 47.7
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.8e-42 176.8 200 48.5
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.8e-42 176.8 200 48.5
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.9e-42 175.6 202 51.0
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 6.7e-42 174.9 198 49.5
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-41 173.7 137 63.5
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.6e-41 172.9 170 56.5
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 5.7e-41 171.8 212 46.2
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 7.4e-41 171.4 193 48.7
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 1.7e-40 170.2 188 48.9
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.8e-40 169.5 198 48.0
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 1.4e-39 167.2 188 47.9
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.8e-39 166.8 204 49.5
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.8e-39 166.8 204 49.5
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.4e-39 166.4 196 47.4
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 4.1e-39 165.6 197 45.7
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 5.3e-39 165.2 196 46.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 2.9e-37 159.5 198 46.0
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 2.9e-37 159.5 170 53.5
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 3.8e-37 159.1 216 43.5
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 5.0e-37 158.7 209 47.8
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 6.5e-37 158.3 216 43.5
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.9e-36 156.8 182 48.4
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.9e-36 156.8 198 45.5
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 2.5e-36 156.4 209 47.4
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.5e-36 156.4 204 43.1
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 6.7e-34 148.3 201 43.8
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 6.7e-34 148.3 199 46.2
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 5.3e-31 138.7 220 42.7
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 2.9e-29 132.9 160 46.9
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 2.5e-28 129.8 167 47.9
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 6.1e-27 125.2 209 37.8
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.0e-26 124.4 119 58.8
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 3.0e-26 122.9 189 39.7
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 4.0e-26 122.5 186 44.6
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 5.2e-26 122.1 196 37.8
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 8.8e-26 121.3 196 37.2
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 8.8e-26 121.3 196 37.2
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.6e-25 119.8 85 69.4
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 9.8e-25 117.9 196 36.7
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.6e-22 110.5 120 54.2
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 2.7e-22 109.8 200 37.0
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 4.5e-22 109.0 200 35.5
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.0e-21 107.8 206 35.4
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 2.9e-21 106.3 72 79.2
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.9e-21 106.3 209 34.4
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 1.4e-18 97.4 160 40.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.2e-17 94.4 169 33.7
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 2.0e-17 93.6 160 36.9
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 2.0e-17 93.6 113 42.5
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 3.4e-17 92.8 160 30.6
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 9.8e-17 91.3 135 36.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 2.2e-16 90.1 154 39.6
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 8.6e-13 78.2 95 38.9
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.2e-11 74.3 94 43.6
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 2.1e-11 73.6 140 31.4
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.3e-08 64.3 50 56.0
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 4.6e-06 55.8 114 30.7


User provided reference genes

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