Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 5.3e-184 647.5 319 100.0
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 7.7e-183 643.7 317 99.7
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 4.8e-177 624.4 317 96.2
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 1.0e-163 580.1 316 89.2
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 3.6e-156 555.1 312 85.6
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 5.7e-154 547.7 318 82.4
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 2.2e-153 545.8 318 82.1
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 4.9e-153 544.7 302 84.8
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 1.4e-152 543.1 318 82.1
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 1.4e-152 543.1 318 82.1
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.8e-152 542.7 301 85.0
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 1.8e-152 542.7 318 82.4
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 4.1e-152 541.6 310 83.9
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 5.4e-152 541.2 301 84.4
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 1.6e-151 539.7 318 81.4
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.6e-151 539.7 301 84.4
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 3.5e-151 538.5 318 81.4
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 1.3e-150 536.6 315 83.5
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 3.9e-150 535.0 318 80.2
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 7.3e-149 530.8 318 80.2
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 3.6e-148 528.5 302 82.1
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 8.0e-148 527.3 315 80.3
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 1.2e-146 523.5 321 78.8
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 2.6e-146 522.3 328 77.7
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 2.6e-146 522.3 323 79.3
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 6.4e-145 517.7 318 77.4
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 8.3e-145 517.3 318 77.7
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 1.1e-144 516.9 284 84.9
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 7.0e-144 514.2 318 76.7
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 2.0e-143 512.7 318 77.0
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 2.0e-143 512.7 314 78.7
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 3.5e-143 511.9 317 77.0
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 1.3e-142 510.0 312 78.2
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 3.9e-142 508.4 325 76.6
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 5.0e-142 508.1 321 78.2
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 8.6e-142 507.3 325 76.6
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 1.1e-141 506.9 325 76.3
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 1.9e-141 506.1 307 79.8
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 2.5e-141 505.8 322 78.6
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 2.5e-141 505.8 322 78.6
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 5.6e-141 504.6 326 76.1
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 3.6e-140 501.9 319 77.7
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 3.1e-139 498.8 321 76.3
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 3.1e-139 498.8 312 76.6
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 4.0e-139 498.4 327 74.6
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 5.2e-139 498.0 326 75.5
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 6.8e-139 497.7 326 74.8
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 2.0e-138 496.1 327 74.3
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 2.6e-138 495.7 314 77.4
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 3.4e-138 495.4 326 73.6
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 1.3e-137 493.4 336 74.7
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 1.7e-137 493.0 327 74.0
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 3.7e-137 491.9 318 75.5
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 4.9e-137 491.5 312 76.0
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 6.4e-137 491.1 327 73.7
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 6.4e-137 491.1 327 73.7
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 1.1e-136 490.3 311 77.2
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 2.4e-136 489.2 328 73.5
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 2.4e-136 489.2 328 73.5
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 6.0e-135 484.6 323 74.0
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 7.8e-135 484.2 326 73.3
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 2.3e-134 482.6 331 71.6
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 8.6e-134 480.7 288 80.6
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 1.9e-133 479.6 284 80.6
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 2.8e-132 475.7 284 79.6
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 4.4e-130 468.4 319 73.0
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 1.3e-129 466.8 313 75.1
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 6.4e-129 464.5 316 74.1
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 5.4e-128 461.5 316 71.5
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 1.6e-127 459.9 389 62.2
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 1.1e-125 453.8 322 73.0
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 2.5e-125 452.6 424 58.3
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 1.4e-123 446.8 252 82.1
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 1.4e-123 446.8 311 68.2
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 1.8e-123 446.4 259 81.5
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 1.2e-122 443.7 294 73.8
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 4.4e-122 441.8 271 79.3
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 5.4e-120 434.9 272 77.2
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 1.2e-119 433.7 263 77.6
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 3.5e-119 432.2 250 81.6
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 6.0e-119 431.4 285 75.8
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 2.5e-117 426.0 326 67.5
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 3.3e-117 425.6 292 72.6
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 6.2e-116 421.4 335 66.3
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 5.3e-115 418.3 306 66.0
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 3.8e-113 412.1 295 71.5
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 3.5e-111 405.6 261 74.7
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 1.7e-110 403.3 311 65.9
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 2.3e-110 402.9 240 81.2
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 7.3e-109 397.9 297 64.0
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 7.3e-109 397.9 318 65.4
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 1.1e-107 394.0 298 63.1
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 2.2e-105 386.3 313 64.2
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 2.4e-104 382.9 299 61.2
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 3.9e-102 375.6 641 39.3
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 2.1e-95 353.2 263 64.6
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 1.1e-93 347.4 263 67.7
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 2.1e-92 343.2 284 64.8
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 9.7e-85 317.8 208 74.0
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 1.1e-83 314.3 332 55.4
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 1.1e-83 314.3 291 55.7
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 3.6e-79 299.3 192 69.8
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 2.0e-74 283.5 240 62.9
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 1.4e-72 277.3 224 60.7
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 2.3e-70 270.0 191 71.2
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 1.4e-67 260.8 158 77.2
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 8.5e-65 251.5 164 76.2
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 1.2e-63 247.7 243 58.0
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 8.0e-63 245.0 320 47.5
unitig_8.g4842 Utricularia gibba HOM05D006118 ORTHO05D007750 2.3e-62 243.4 153 74.5
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 5.2e-62 242.3 191 67.0
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 2.3e-54 216.9 174 60.9
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 1.2e-53 214.5 145 71.0
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 5.9e-50 202.2 131 76.3
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 5.0e-41 172.6 101 78.2
Lj7A209G42 Lonicera japonica HOM05D006118 ORTHO05D007750 5.6e-40 169.1 90 85.6
PRCOL_00005697 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 1.9e-32 144.1 315 31.1
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 2.5e-32 143.7 262 35.1
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 6.2e-31 139.0 92 69.6
SEGI_23264 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 6.4e-28 129.0 80 76.2
MCO03G156 Micromonas commoda HOM05D006118 ORTHO05D007750 7.8e-18 95.5 337 26.7
Lalb_Chr23g0268021 Lupinus albus HOM05D006118 ORTHO05D007750 4.7e-15 86.3 47 85.1
SEGI_18851 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 4.1e-11 73.2 53 62.3
MD15G1048200 Malus domestica HOM05D006118 ORTHO05D007750 7.8e-10 68.9 48 64.6
HPP92_016211 Vanilla planifolia HOM05D006118 ORTHO05D007750 1.9e-08 64.3 45 64.4
BcaB01g01552 Brassica carinata HOM05D006118 ORTHO05D007750 9.6e-08 62.0 51 66.7
MSTRG.1710 Avicennia marina HOM05D006118 ORTHO05D007750 8.9e-06 55.5 30 76.7


User provided reference genes

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