Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 0.0e+00 1112.1 571 100.0
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 4.7e-308 1060.4 571 96.0
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 6.4e-297 1023.5 572 94.1
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.0e-274 948.7 568 83.5
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.4e-274 948.0 579 83.6
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.8e-273 944.5 561 84.7
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 7.9e-271 936.8 566 83.9
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.0e-270 936.4 572 83.4
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.8e-270 935.6 584 82.0
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.3e-270 935.3 573 83.1
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.9e-270 934.5 573 82.9
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.1e-269 932.9 578 82.4
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.5e-269 932.6 573 82.9
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.5e-269 931.8 604 79.5
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.3e-268 929.5 576 82.5
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.8e-268 928.3 555 84.5
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.0e-266 922.2 568 82.4
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 2.6e-266 921.8 540 86.5
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 7.6e-266 920.2 567 81.8
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 2.9e-265 918.3 564 82.6
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 5.5e-264 914.1 550 83.5
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 7.1e-264 913.7 548 83.6
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 4.6e-263 911.0 537 84.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 6.0e-263 910.6 568 80.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 6.0e-263 910.6 546 84.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 8.7e-262 906.7 522 87.0
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.1e-261 906.4 563 79.9
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.1e-261 906.4 553 83.2
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 4.3e-261 904.4 535 85.2
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 9.6e-261 903.3 567 80.6
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.6e-260 902.5 580 79.8
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.6e-260 902.5 583 79.2
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.6e-260 902.5 525 85.5
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 2.8e-260 901.7 548 82.5
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 2.8e-260 901.7 570 80.7
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 3.7e-260 901.4 528 84.7
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.1e-259 899.8 570 80.7
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.4e-259 899.4 581 79.2
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.1e-259 898.3 581 79.0
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.1e-259 898.3 530 84.7
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 3.1e-259 898.3 552 81.2
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 9.0e-259 896.7 568 80.6
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-258 896.0 536 84.3
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.5e-258 896.0 534 83.1
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.0e-258 895.6 575 80.2
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-258 895.2 583 79.2
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 4.5e-258 894.4 554 81.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 4.5e-258 894.4 554 81.6
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 4.5e-258 894.4 563 81.0
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 5.8e-258 894.0 553 81.6
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-257 893.3 554 81.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.0e-257 893.3 554 81.6
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.0e-257 893.3 554 81.6
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.3e-257 892.9 565 78.9
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.3e-257 892.9 527 84.4
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.2e-257 892.1 570 79.6
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.9e-257 891.7 592 78.0
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.8e-257 891.3 551 81.7
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.1e-256 889.8 548 81.2
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.4e-256 889.4 578 79.9
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.5e-256 888.6 554 80.9
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.2e-256 888.3 557 80.1
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.2e-256 888.3 563 80.5
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 3.2e-256 888.3 521 84.5
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 7.1e-256 887.1 554 80.9
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.2e-255 886.3 551 80.8
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.1e-255 885.6 587 77.3
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-255 885.2 573 79.6
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.5e-255 884.8 526 84.4
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.5e-255 884.8 550 80.9
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 6.1e-255 884.0 549 80.3
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-254 883.2 573 79.4
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 2.3e-254 882.1 570 78.9
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 3.9e-254 881.3 561 79.5
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 6.7e-254 880.6 561 79.5
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 8.7e-254 880.2 532 82.9
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 8.7e-254 880.2 566 78.6
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.5e-253 879.4 555 78.7
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 3.7e-252 874.8 572 78.0
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 4.8e-252 874.4 572 78.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.4e-251 872.8 560 77.9
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 3.4e-250 868.2 549 79.8
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 4.6e-247 857.8 537 80.8
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.0e-246 856.7 589 75.9
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.3e-246 855.5 561 77.0
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.0e-246 855.1 569 75.2
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.7e-246 854.0 559 78.4
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 8.8e-246 853.6 544 78.5
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.1e-245 853.2 568 76.4
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 7.4e-245 850.5 574 75.3
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.7e-244 849.4 549 78.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.2e-244 849.0 552 77.5
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 4.8e-244 847.8 522 81.8
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 6.3e-244 847.4 566 76.0
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 5.9e-242 840.9 535 77.0
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 2.9e-241 838.6 558 77.8
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.9e-241 838.6 566 75.6
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 1.1e-240 836.6 451 93.3
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 1.4e-238 829.7 454 92.3
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 4.1e-235 818.1 552 75.0
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.8e-233 811.6 476 85.5
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.0e-230 803.5 489 82.2
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 3.3e-229 798.5 571 72.2
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 2.8e-228 795.4 569 73.5
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 6.3e-228 794.3 474 83.5
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.2e-223 780.0 566 70.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.6e-223 779.6 501 74.9
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.7e-223 778.9 519 75.3
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.0e-221 772.7 468 81.8
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.3e-220 770.0 493 74.8
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.2e-217 759.2 531 69.7
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 5.2e-206 721.5 404 89.1
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.4e-203 712.6 544 68.9
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.0e-197 693.0 546 64.3
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 9.8e-197 690.6 534 67.4
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.2e-191 673.7 576 64.8
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 3.6e-191 672.2 564 65.2
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 8.9e-190 667.5 551 61.2
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.4e-187 660.2 466 70.4
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.3e-185 653.7 524 67.6
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 2.3e-182 642.9 526 59.7
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 2.4e-179 632.9 511 62.8
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 3.1e-166 589.3 318 90.3
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 2.4e-163 579.7 505 61.0
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.1e-162 576.6 522 59.6
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.0e-161 574.3 540 58.3
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 8.4e-156 554.7 410 65.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.9e-155 553.5 496 60.1
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 3.2e-155 552.7 350 82.6
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.1e-155 551.6 496 59.7
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.7e-154 549.7 494 59.3
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 2.7e-138 496.5 331 72.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.9e-130 468.4 493 53.3
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 5.0e-124 449.1 505 47.7
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.7e-116 424.1 601 46.3
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.0e-105 388.3 528 40.7
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-97 360.9 444 48.2
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 3.0e-89 333.6 447 40.7
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.4e-86 323.9 347 54.8
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.2e-72 278.5 184 71.7
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.5e-72 278.1 554 38.1
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.1e-70 270.0 173 83.8
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.0e-57 226.9 252 49.6
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 9.9e-56 222.2 483 35.2
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.1e-49 202.2 414 36.0
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 7.1e-46 189.5 135 71.9
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 9.3e-46 189.1 105 86.7
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.2e-39 167.9 106 83.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 4.2e-38 163.7 124 71.8
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.1e-37 161.4 134 59.7
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 3.8e-31 140.6 80 85.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.7e-28 129.4 95 75.8
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 2.5e-27 127.9 77 85.7
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 5.0e-23 113.6 85 56.5
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 2.1e-21 108.2 65 84.6
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 8.7e-20 102.8 76 68.4
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 2.4e-17 94.7 71 70.4
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 4.5e-16 90.5 54 85.2
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 3.2e-14 84.3 50 82.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.4e-12 79.0 63 65.1
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 3.0e-12 77.8 53 71.7
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 1.1e-11 75.9 77 54.5
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.3e-11 74.3 64 60.9
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 1.4e-09 68.9 43 76.7
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.6e-08 64.7 52 61.5
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 2.9e-07 61.2 50 60.0
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.5e-07 60.1 57 50.9
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 6.5e-07 60.1 156 31.4
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 5.5e-06 57.0 44 56.8


User provided reference genes

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