Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 1.0e-145 520.0 258 100.0
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 9.7e-144 513.5 258 98.4
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 1.0e-132 476.9 258 91.1
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 2.4e-102 375.9 246 73.2
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 4.1e-102 375.2 259 71.0
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 4.6e-101 371.7 257 69.6
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 1.0e-100 370.5 256 69.9
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 3.3e-99 365.5 247 70.9
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 5.6e-99 364.8 259 68.7
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 4.7e-98 361.7 259 66.4
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 2.3e-97 359.4 263 66.5
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 6.8e-97 357.8 246 69.5
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 6.8e-97 357.8 246 68.7
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 8.9e-97 357.5 263 66.5
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 1.5e-96 356.7 258 67.4
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 3.4e-96 355.5 259 66.4
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 4.4e-96 355.1 247 70.4
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 9.8e-96 354.0 263 66.5
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 1.7e-95 353.2 244 69.7
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 2.2e-95 352.8 258 67.4
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 2.2e-95 352.8 257 66.5
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 4.9e-95 351.7 253 66.4
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 3.2e-94 349.0 260 66.5
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 3.2e-94 349.0 251 66.9
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 5.4e-94 348.2 259 66.4
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 7.1e-94 347.8 229 70.7
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 9.2e-94 347.4 261 65.9
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 1.2e-93 347.1 268 64.2
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 1.6e-93 346.7 246 68.3
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 2.1e-93 346.3 246 68.3
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 2.1e-93 346.3 238 68.1
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 7.8e-93 344.4 248 67.7
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 1.0e-92 344.0 253 64.4
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 3.0e-92 342.4 258 63.2
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 3.0e-92 342.4 258 63.2
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 3.0e-92 342.4 234 69.7
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 6.6e-92 341.3 256 65.6
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 1.1e-91 340.5 270 62.2
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 1.5e-91 340.1 248 66.9
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 1.9e-91 339.7 249 63.5
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 1.9e-91 339.7 248 68.5
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 2.5e-91 339.3 263 63.5
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 2.5e-91 339.3 248 66.9
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 2.5e-91 339.3 255 65.1
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 5.6e-91 338.2 253 62.8
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 7.3e-91 337.8 263 63.1
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 7.3e-91 337.8 258 62.4
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 7.3e-91 337.8 253 62.8
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 7.3e-91 337.8 248 66.5
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 9.5e-91 337.4 265 61.9
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 1.6e-90 336.7 258 62.4
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 1.6e-90 336.7 247 64.8
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 1.6e-90 336.7 257 64.2
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 2.1e-90 336.3 259 64.1
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 2.8e-90 335.9 243 63.8
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 4.7e-90 335.1 266 62.4
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 8.1e-90 334.3 247 65.2
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 1.4e-89 333.6 238 65.5
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.4e-89 333.6 250 67.2
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 1.8e-89 333.2 248 62.5
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 1.8e-89 333.2 257 63.8
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 1.8e-89 333.2 238 64.7
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 2.3e-89 332.8 262 66.0
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 3.1e-89 332.4 246 64.6
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 5.2e-89 331.6 239 68.2
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 6.8e-89 331.3 236 65.3
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 6.8e-89 331.3 246 64.6
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 6.8e-89 331.3 243 68.7
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 8.9e-89 330.9 243 68.7
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 1.2e-88 330.5 262 61.1
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 2.0e-88 329.7 238 64.7
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 2.0e-88 329.7 172 93.6
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 2.6e-88 329.3 262 64.9
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 5.8e-88 328.2 262 64.5
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 7.6e-88 327.8 262 64.5
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 9.9e-88 327.4 257 64.2
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 1.3e-87 327.0 254 63.0
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 3.7e-87 325.5 251 62.5
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 6.4e-87 324.7 246 62.2
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 6.4e-87 324.7 265 59.6
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 8.4e-87 324.3 241 64.7
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 7.8e-85 317.8 259 60.6
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.3e-84 317.0 263 60.8
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 1.7e-84 316.6 265 58.1
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 3.0e-84 315.8 237 62.0
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 1.9e-83 313.2 250 60.0
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 3.3e-83 312.4 262 62.6
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 7.3e-83 311.2 236 61.9
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 9.6e-83 310.8 247 61.1
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 1.2e-80 303.9 246 59.8
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 2.2e-79 299.7 246 59.3
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 2.4e-78 296.2 225 63.1
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 2.1e-77 293.1 270 56.3
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 2.7e-77 292.7 252 56.0
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 3.5e-77 292.4 242 60.3
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 6.6e-76 288.1 239 57.7
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.3e-74 283.9 222 63.1
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 1.1e-73 280.8 218 60.6
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 2.4e-73 279.6 229 58.5
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 2.9e-71 272.7 218 59.6
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 2.9e-71 272.7 280 51.4
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 8.4e-71 271.2 218 58.7
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 4.6e-69 265.4 261 52.1
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 1.7e-68 263.5 175 72.0
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 3.0e-68 262.7 274 50.0
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.6e-66 256.9 204 58.3
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 5.3e-65 251.9 246 52.0
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 2.0e-64 250.0 196 63.8
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 4.6e-61 238.8 176 64.2
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 4.6e-61 238.8 172 65.7
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 7.9e-61 238.0 172 65.7
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 1.4e-57 227.3 242 45.9
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.4e-54 217.2 152 67.1
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 4.5e-48 195.7 233 44.6
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 5.0e-47 192.2 217 45.6
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 1.9e-46 190.3 156 58.3
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 4.2e-46 189.1 672 26.5
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 5.7e-43 178.7 133 63.9
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 1.2e-40 171.0 180 47.2
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 4.5e-40 169.1 135 58.5
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.8e-39 166.0 135 57.8
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 1.6e-37 160.6 132 59.8
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 9.1e-33 144.8 109 63.3
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 4.7e-29 132.5 146 45.2
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 2.2e-26 123.6 81 70.4
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 4.1e-25 119.4 91 62.6
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.2e-24 117.9 127 45.7
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 2.9e-23 113.2 94 59.6
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 2.9e-23 113.2 94 59.6
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.1e-22 111.3 79 64.6
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 1.1e-22 111.3 106 49.1
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 7.2e-22 108.6 92 55.4
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 3.3e-19 99.8 90 53.3
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 6.3e-18 95.5 261 30.7
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 2.5e-14 83.6 258 29.8
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 5.9e-08 62.4 66 48.5
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 2.2e-07 60.5 66 48.5
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 2.2e-07 60.5 66 48.5


User provided reference genes

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