Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G035430 Cucumis sativus L. HOM05D000111 ORTHO05D000134 1.3e-72 276.2 129 100.0
ClCG05G017690 Citrullus lanatus HOM05D000111 ORTHO05D000134 1.0e-37 160.2 140 57.9
CsaV3_4G035440 Cucumis sativus L. HOM05D000111 ORTHO05D000134 3.2e-31 138.7 140 50.0
MELO3C016853.2 Cucumis melo HOM05D000111 ORTHO05D000134 9.5e-31 137.1 140 50.0
Ciclev10010192m.g Citrus clementina HOM05D000111 ORTHO05D000134 4.7e-22 108.2 139 40.3
COL.COLO4_21020 Corchorus olitorius HOM05D000111 ORTHO05D000134 5.2e-21 104.8 141 38.3
FvH4_2g32291 Fragaria vesca HOM05D000111 ORTHO05D000134 8.9e-21 104.0 142 41.5
FAN15G0967 Fragaria x ananassa HOM05D000111 ORTHO05D000134 8.9e-21 104.0 142 41.5
FAN24G2927 Fragaria x ananassa HOM05D000111 ORTHO05D000134 8.9e-21 104.0 142 41.5
FAN27G0790 Fragaria x ananassa HOM05D000111 ORTHO05D000134 8.9e-21 104.0 142 41.5
Gohir.D08G270100 Gossypium hirsutum HOM05D000111 ORTHO05D000134 1.2e-20 103.6 140 37.9
Gorai.004G288000 Gossypium raimondii HOM05D000111 ORTHO05D000134 1.2e-20 103.6 140 37.9
Ciclev10010211m.g Citrus clementina HOM05D000111 ORTHO05D000134 1.5e-20 103.2 136 37.5
Duzib168G1652 Durio zibethinus HOM05D000111 ORTHO05D000134 1.5e-20 103.2 140 40.0
Gohir.A08G249300 Gossypium hirsutum HOM05D000111 ORTHO05D000134 1.5e-20 103.2 140 37.9
Gohir.A08G249100 Gossypium hirsutum HOM05D000111 ORTHO05D000134 7.5e-20 100.9 140 36.4
Gohir.D08G270200 Gossypium hirsutum HOM05D000111 ORTHO05D000134 9.8e-20 100.5 140 37.9
Gorai.004G288100 Gossypium raimondii HOM05D000111 ORTHO05D000134 9.8e-20 100.5 140 37.9
Gohir.A08G249400 Gossypium hirsutum HOM05D000111 ORTHO05D000134 1.4e-18 96.7 140 37.1
Cpa.g.sc60.72 Carica papaya HOM05D000111 ORTHO05D000134 7.0e-18 94.4 138 34.1
Hund03364 Selenicereus undatus HOM05D000111 ORTHO05D000134 2.0e-17 92.8 140 36.4
Prupe.1G415900 Prunus persica HOM05D000111 ORTHO05D000134 2.7e-17 92.4 142 38.0
Sc09g0009620 Simmondsia chinensis HOM05D000111 ORTHO05D000134 2.7e-17 92.4 140 37.1
THA.LOC109116585 Tarenaya hassleriana HOM05D000111 ORTHO05D000134 2.7e-17 92.4 138 37.0
Cfa017924 Carpinus fangiana HOM05D000111 ORTHO05D000134 7.8e-17 90.9 139 38.1
Gorai.004G287900 Gossypium raimondii HOM05D000111 ORTHO05D000134 7.8e-17 90.9 136 34.6
Nn8g38969 Nelumbo nucifera HOM05D000111 ORTHO05D000134 7.8e-17 90.9 137 32.1
Lalb_Chr11g0063071 Lupinus albus HOM05D000111 ORTHO05D000134 1.0e-16 90.5 139 36.7
CANSAT11G1499 Cannabis sativa HOM05D000111 ORTHO05D000134 1.7e-16 89.7 138 39.1
Cfa012807 Carpinus fangiana HOM05D000111 ORTHO05D000134 2.3e-16 89.4 139 36.0
Gohir.D08G270000 Gossypium hirsutum HOM05D000111 ORTHO05D000134 2.3e-16 89.4 136 33.8
Ciclev10010668m.g Citrus clementina HOM05D000111 ORTHO05D000134 3.0e-16 89.0 122 41.0
FAN20G0791 Fragaria x ananassa HOM05D000111 ORTHO05D000134 3.0e-16 89.0 142 38.7
Potri.006G233700 Populus trichocarpa HOM05D000111 ORTHO05D000134 3.0e-16 89.0 139 35.3
Sabra06G0182000 Salix brachista HOM05D000111 ORTHO05D000134 5.0e-16 88.2 139 35.3
Eucgr.C02999 Eucalyptus grandis HOM05D000111 ORTHO05D000134 8.6e-16 87.4 135 35.6
MD08G1074000 Malus domestica HOM05D000111 ORTHO05D000134 8.6e-16 87.4 142 35.2
CANSAT25G0441 Cannabis sativa HOM05D000111 ORTHO05D000134 1.5e-15 86.7 137 37.2
Medtr3g104030 Medicago truncatula HOM05D000111 ORTHO05D000134 1.5e-15 86.7 139 39.6
Carub.0006s2372 Capsella rubella HOM05D000111 ORTHO05D000134 1.9e-15 86.3 138 32.6
COL.COLO4_21019 Corchorus olitorius HOM05D000111 ORTHO05D000134 3.3e-15 85.5 141 34.8
Medtr3g103980 Medicago truncatula HOM05D000111 ORTHO05D000134 3.3e-15 85.5 138 39.1
Atru.chr7.2028 Acer truncatum HOM05D000111 ORTHO05D000134 5.6e-15 84.7 142 33.1
BcaB07g29974 Brassica carinata HOM05D000111 ORTHO05D000134 5.6e-15 84.7 138 34.8
Thhalv10005563m.g Eutrema salsugineum HOM05D000111 ORTHO05D000134 7.3e-15 84.3 134 34.3
CARHR187200 Cardamine hirsuta HOM05D000111 ORTHO05D000134 9.5e-15 84.0 138 34.8
Atru.chr3.4236 Acer truncatum HOM05D000111 ORTHO05D000134 1.2e-14 83.6 140 33.6
Psat5g037520 Pisum sativum HOM05D000111 ORTHO05D000134 1.6e-14 83.2 137 36.5
Sp2g21720 Schrenkiella parvula HOM05D000111 ORTHO05D000134 2.1e-14 82.8 137 32.8
BcaNung04551 Brassica carinata HOM05D000111 ORTHO05D000134 3.6e-14 82.0 134 32.1
Carub.0006s2371 Capsella rubella HOM05D000111 ORTHO05D000134 6.2e-14 81.3 138 31.2
Thhalv10004316m.g Eutrema salsugineum HOM05D000111 ORTHO05D000134 6.2e-14 81.3 138 34.1
QL93p0100_0671 Quercus lobata HOM05D000111 ORTHO05D000134 6.2e-14 81.3 140 36.4
Aa31LG11G4950 Aethionema arabicum HOM05D000111 ORTHO05D000134 8.0e-14 80.9 137 32.1
A02p39500 Brassica napus HOM05D000111 ORTHO05D000134 8.0e-14 80.9 139 33.8
BraA02t08915Z Brassica rapa HOM05D000111 ORTHO05D000134 8.0e-14 80.9 139 33.8
Carub.0006s2373 Capsella rubella HOM05D000111 ORTHO05D000134 8.0e-14 80.9 138 31.2
Medtr3g104000 Medicago truncatula HOM05D000111 ORTHO05D000134 8.0e-14 80.9 138 38.4
QL02p001729 Quercus lobata HOM05D000111 ORTHO05D000134 8.0e-14 80.9 139 33.1
AL6G37910 Arabidopsis lyrata HOM05D000111 ORTHO05D000134 1.1e-13 80.5 138 32.6
BcaB01g00712 Brassica carinata HOM05D000111 ORTHO05D000134 1.1e-13 80.5 139 33.8
A06p36500 Brassica napus HOM05D000111 ORTHO05D000134 1.1e-13 80.5 134 32.8
C07p41980 Brassica napus HOM05D000111 ORTHO05D000134 1.1e-13 80.5 134 32.8
BolC7t44729H Brassica oleracea HOM05D000111 ORTHO05D000134 1.1e-13 80.5 134 32.8
BraA06t26576Z Brassica rapa HOM05D000111 ORTHO05D000134 1.1e-13 80.5 134 32.8
Sp2g21710 Schrenkiella parvula HOM05D000111 ORTHO05D000134 1.1e-13 80.5 139 34.5
TAR383G0715 Trochodendron aralioides HOM05D000111 ORTHO05D000134 1.1e-13 80.5 137 32.1
VMungo1309G2165 Vigna mungo HOM05D000111 ORTHO05D000134 1.1e-13 80.5 137 35.8
Ca_04291_v3 Cicer arietinum L. HOM05D000111 ORTHO05D000134 1.4e-13 80.1 135 36.3
Haze_18225 Corylus avellana HOM05D000111 ORTHO05D000134 1.8e-13 79.7 140 35.0
AT5G25950 Arabidopsis thaliana HOM05D000111 ORTHO05D000134 2.3e-13 79.3 139 36.0
A02p39510 Brassica napus HOM05D000111 ORTHO05D000134 3.1e-13 79.0 134 33.6
BraA02t08916Z Brassica rapa HOM05D000111 ORTHO05D000134 3.1e-13 79.0 134 33.6
AT5G25960 Arabidopsis thaliana HOM05D000111 ORTHO05D000134 5.2e-13 78.2 138 32.6
Gohir.A08G249201 Gossypium hirsutum HOM05D000111 ORTHO05D000134 5.2e-13 78.2 114 36.0
Lj1g0011777 Lotus japonicus HOM05D000111 ORTHO05D000134 5.2e-13 78.2 135 34.1
Phvul.009G075700 Phaseolus vulgaris HOM05D000111 ORTHO05D000134 5.2e-13 78.2 137 34.3
BcaB07g29973 Brassica carinata HOM05D000111 ORTHO05D000134 6.8e-13 77.8 134 32.8
Cfa017925 Carpinus fangiana HOM05D000111 ORTHO05D000134 6.8e-13 77.8 140 32.1
VMungo1309G0973 Vigna mungo HOM05D000111 ORTHO05D000134 6.8e-13 77.8 138 35.5
Carub.0006s2370 Capsella rubella HOM05D000111 ORTHO05D000134 1.2e-12 77.0 137 32.8
THA.LOC104811316 Tarenaya hassleriana HOM05D000111 ORTHO05D000134 1.2e-12 77.0 138 32.6
AL6G37900 Arabidopsis lyrata HOM05D000111 ORTHO05D000134 2.0e-12 76.3 139 31.7
CiPaw.15G042500 Carya illinoinensis HOM05D000111 ORTHO05D000134 2.0e-12 76.3 139 31.7
Aqoxy7G01344 Aquilegia oxysepala HOM05D000111 ORTHO05D000134 3.4e-12 75.5 145 31.7
Phvul.009G075600 Phaseolus vulgaris HOM05D000111 ORTHO05D000134 3.4e-12 75.5 137 35.8
Thhalv10005458m.g Eutrema salsugineum HOM05D000111 ORTHO05D000134 4.4e-12 75.1 138 32.6
Lj4g0008498 Lotus japonicus HOM05D000111 ORTHO05D000134 4.4e-12 75.1 137 31.4
BraA02t08917Z Brassica rapa HOM05D000111 ORTHO05D000134 5.8e-12 74.7 138 31.9
Ca_15875_v3 Cicer arietinum L. HOM05D000111 ORTHO05D000134 5.8e-12 74.7 137 37.2
Medtr3g104070 Medicago truncatula HOM05D000111 ORTHO05D000134 5.8e-12 74.7 137 35.8
TWI63G0435 Tripterygium wilfordii HOM05D000111 ORTHO05D000134 1.7e-11 73.2 135 31.9
CARHR187220 Cardamine hirsuta HOM05D000111 ORTHO05D000134 2.9e-11 72.4 138 31.9
Glyma.06G050400 Glycine max HOM05D000111 ORTHO05D000134 2.9e-11 72.4 139 36.0
Psat5g037440 Pisum sativum HOM05D000111 ORTHO05D000134 2.9e-11 72.4 137 37.2
Aqoxy408s002 Aquilegia oxysepala HOM05D000111 ORTHO05D000134 3.7e-11 72.0 139 30.9
Aqoxy7G03944 Aquilegia oxysepala HOM05D000111 ORTHO05D000134 3.7e-11 72.0 139 30.9
TPR.G25347 Trifolium pratense HOM05D000111 ORTHO05D000134 3.7e-11 72.0 137 34.3
TPR.G25354 Trifolium pratense HOM05D000111 ORTHO05D000134 4.9e-11 71.6 133 35.3
VMungo1309G1484 Vigna mungo HOM05D000111 ORTHO05D000134 6.4e-11 71.2 136 33.1
BolC2t11985H Brassica oleracea HOM05D000111 ORTHO05D000134 8.3e-11 70.9 138 30.4
Psat5g037400 Pisum sativum HOM05D000111 ORTHO05D000134 8.3e-11 70.9 137 34.3
QL02p001753 Quercus lobata HOM05D000111 ORTHO05D000134 1.1e-10 70.5 140 32.9
TPR.G24619 Trifolium pratense HOM05D000111 ORTHO05D000134 1.1e-10 70.5 135 37.0
Atru.chr7.2027 Acer truncatum HOM05D000111 ORTHO05D000134 1.9e-10 69.7 134 30.6
GSVIVG01035338001 Vitis vinifera HOM05D000111 ORTHO05D000134 2.4e-10 69.3 139 31.7
Lj5g0005604 Lotus japonicus HOM05D000111 ORTHO05D000134 3.2e-10 68.9 136 27.2
TWI34G1063 Tripterygium wilfordii HOM05D000111 ORTHO05D000134 4.1e-10 68.6 138 27.5
Lj1g0004745 Lotus japonicus HOM05D000111 ORTHO05D000134 5.4e-10 68.2 140 32.9
Lj5g0021044 Lotus japonicus HOM05D000111 ORTHO05D000134 5.4e-10 68.2 138 34.1
Manes.16G077300 Manihot esculenta HOM05D000111 ORTHO05D000134 5.4e-10 68.2 140 32.9
Psat5g037480 Pisum sativum HOM05D000111 ORTHO05D000134 5.4e-10 68.2 137 34.3
TAR624G0972 Trochodendron aralioides HOM05D000111 ORTHO05D051500 7.0e-10 67.8 134 31.3
Gohir.A08G249000 Gossypium hirsutum HOM05D000111 ORTHO05D000134 1.2e-09 67.0 136 28.7
Gohir.D08G269900 Gossypium hirsutum HOM05D000111 ORTHO05D000134 1.2e-09 67.0 136 28.7
Gorai.004G287700 Gossypium raimondii HOM05D000111 ORTHO05D000134 1.2e-09 67.0 136 28.7
vmacro05275 Vaccinium macrocarpon HOM05D000111 ORTHO05D000134 1.2e-09 67.0 140 29.3
Ca_15877_v3 Cicer arietinum L. HOM05D000111 ORTHO05D000134 1.6e-09 66.6 137 32.8
Lj1g0012600 Lotus japonicus HOM05D000111 ORTHO05D000134 1.6e-09 66.6 138 34.8
Phvul.001G033000 Phaseolus vulgaris HOM05D000111 ORTHO05D000134 2.7e-09 65.9 138 26.8
PSO384G0048 Papaver somniferum HOM05D000111 ORTHO05D000134 6.0e-09 64.7 140 30.7
Actinidia14698 Actinidia chinensis HOM05D000111 ORTHO05D000134 7.8e-09 64.3 137 27.7
EL10Ac2g03946 Beta vulgaris HOM05D000111 ORTHO05D000134 1.0e-08 63.9 139 28.1
COL.COLO4_21021 Corchorus olitorius HOM05D000111 ORTHO05D000134 1.0e-08 63.9 137 32.1
RcHm_v2.0_Chr6g0310411 Rosa chinensis HOM05D000111 ORTHO05D000134 1.0e-08 63.9 134 28.4
SGA_v2.0_scaffold163G38041 Striga asiatica HOM05D000111 ORTHO05D000134 2.3e-08 62.8 137 24.8
Thecc.09G050300 Theobroma cacao HOM05D000111 ORTHO05D000134 3.0e-08 62.4 142 29.6
Manes.16G077400 Manihot esculenta HOM05D000111 ORTHO05D000134 3.9e-08 62.0 134 28.4
Solyc11g070090.1 Solanum lycopersicum HOM05D000111 ORTHO05D000134 3.9e-08 62.0 135 26.7
Sopen11g028760 Solanum pennellii HOM05D000111 ORTHO05D000134 3.9e-08 62.0 135 26.7
PGSC0003DMG400038496 Solanum tuberosum HOM05D000111 ORTHO05D000134 3.9e-08 62.0 135 26.7
CDE07G1044 Ceratophyllum demersum HOM05D000111 ORTHO05D001475 5.0e-08 61.6 134 29.1
Dinv23418 Davidia involucrata HOM05D000111 ORTHO05D000134 5.0e-08 61.6 137 25.5
Prupe.1G415800 Prunus persica HOM05D000111 ORTHO05D000134 5.0e-08 61.6 136 29.4
CANSAT11G0417 Cannabis sativa HOM05D000111 ORTHO05D000134 6.6e-08 61.2 134 26.9
Rhsim07G0144200 Rhododendron simsii HOM05D000111 ORTHO05D000134 6.6e-08 61.2 137 27.0
Ciclev10008443m.g Citrus clementina HOM05D000111 ORTHO05D000134 8.6e-08 60.8 134 26.1
BcaB07g29972 Brassica carinata HOM05D000111 ORTHO05D000134 1.5e-07 60.1 124 31.5
CARHR187210 Cardamine hirsuta HOM05D000111 ORTHO05D000134 1.5e-07 60.1 114 34.2
CiPaw.15G042400 Carya illinoinensis HOM05D000111 ORTHO05D000134 1.9e-07 59.7 137 27.0
HanXRQChr12g0354931 Helianthus annuus HOM05D000111 ORTHO05D000134 1.9e-07 59.7 133 28.6
THA.LOC104817585 Tarenaya hassleriana HOM05D000111 ORTHO05D000134 2.5e-07 59.3 67 49.3
HanXRQChr08g0208491 Helianthus annuus HOM05D000111 ORTHO05D000134 3.3e-07 58.9 133 30.1
PSO421G0499 Papaver somniferum HOM05D000111 ORTHO05D000134 3.3e-07 58.9 125 30.4
PSO421G0581 Papaver somniferum HOM05D000111 ORTHO05D000134 3.3e-07 58.9 125 30.4
Cc00_g31200 Coffea canephora HOM05D000111 ORTHO05D000134 5.6e-07 58.2 136 25.7
FAN27G3026 Fragaria x ananassa HOM05D000111 ORTHO05D000134 7.3e-07 57.8 134 27.6
FvH4_2g32290 Fragaria vesca HOM05D000111 ORTHO05D000134 9.5e-07 57.4 134 27.6
CDE04G1932 Ceratophyllum demersum HOM05D000111 ORTHO05D000134 1.2e-06 57.0 136 29.4
Oeu059918.1 Olea europaea HOM05D000111 ORTHO05D000134 1.2e-06 57.0 134 29.9
Os07g0205500 Oryza sativa ssp. japonica HOM05D000111 ORTHO05D000134 1.2e-06 57.0 133 25.6
SalBow1G6914 Salvia bowleyana HOM05D000111 ORTHO05D000134 1.2e-06 57.0 134 26.1
MBI01_g16593_MAGBIO Magnolia biondii HOM05D002706 ORTHO05D003253 1.6e-06 56.6 132 28.0
Peaxi162Scf00247g00617 Petunia axillaris HOM05D000111 ORTHO05D000134 2.1e-06 56.2 139 25.2
Solyc11g070080.1 Solanum lycopersicum HOM05D000111 ORTHO05D000134 2.1e-06 56.2 140 25.7
Cc00_g27190 Coffea canephora HOM05D000111 ORTHO05D000134 2.8e-06 55.8 134 27.6
Oeu001247.1 Olea europaea HOM05D000111 ORTHO05D000134 2.8e-06 55.8 134 25.4
AagrBONN_evm.TU.Sc2ySwM_368.819 Anthoceros agrestis HOM05D000111 ORTHO05D000134 3.6e-06 55.5 138 26.1
Lalb_Chr12g0204561 Lupinus albus HOM05D000111 ORTHO05D000134 3.6e-06 55.5 133 24.1
PSO832G1057 Papaver somniferum HOM05D000111 ORTHO05D000134 3.6e-06 55.5 140 28.6
VMungo1080G0133 Vigna mungo HOM05D000111 ORTHO05D001475 3.6e-06 55.5 135 26.7
MSTRG.18025 Avicennia marina HOM05D000111 ORTHO05D000134 4.7e-06 55.1 133 24.1
HanXRQChr08g0208501 Helianthus annuus HOM05D000111 ORTHO05D000134 4.7e-06 55.1 132 26.5
Hma1.2p1_0128F.1_g059970 Hydrangea macrophylla HOM05D000111 ORTHO05D000134 4.7e-06 55.1 137 24.1
SMO358G0488 Selaginella moellendorffii HOM05D000111 ORTHO05D000134 4.7e-06 55.1 133 25.6
PGSC0003DMG400046849 Solanum tuberosum HOM05D000111 ORTHO05D000134 4.7e-06 55.1 135 25.2
AT2G44240 Arabidopsis thaliana HOM05D000111 ORTHO05D000134 6.2e-06 54.7 134 32.8
DCAR_001978 Daucus carota HOM05D000111 ORTHO05D000134 6.2e-06 54.7 133 23.3
Migut.N00554 Erythranthe guttata HOM05D000111 ORTHO05D000134 6.2e-06 54.7 133 24.1
HanXRQChr08g0208511 Helianthus annuus HOM05D000111 ORTHO05D000134 6.2e-06 54.7 133 27.1
PSO732G0691 Papaver somniferum HOM05D000111 ORTHO05D000134 6.2e-06 54.7 140 28.6
Solyc01g081570.3 Solanum lycopersicum HOM05D000111 ORTHO05D000134 6.2e-06 54.7 138 23.2
Sopen01g033120 Solanum pennellii HOM05D000111 ORTHO05D000134 6.2e-06 54.7 138 23.2
Cc02_g26690 Coffea canephora HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 24.8
Glyma.05G167100 Glycine max HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 24.1
HanXRQChr12g0354951 Helianthus annuus HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 28.6
Lsat_1_v5_gn_4_5001 Lactuca sativa HOM05D000111 ORTHO05D000134 8.1e-06 54.3 134 29.9
Lj4g0021244 Lotus japonicus HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 24.8
Lalb_Chr07g0185891 Lupinus albus HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 24.1
Lalb_Chr13g0295571 Lupinus albus HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 23.3
MD03G1003500 Malus domestica HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 24.1
Prupe.6G003200 Prunus persica HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 24.1
Sed0003143 Sechium edule HOM05D000111 ORTHO05D000134 8.1e-06 54.3 133 24.8
PGSC0003DMG400031115 Solanum tuberosum HOM05D000111 ORTHO05D000134 8.1e-06 54.3 138 23.2


User provided reference genes

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