Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.3e-128 463.0 230 100.0
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 4.8e-118 427.9 219 96.3
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 9.4e-106 387.1 221 88.7
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.4e-69 266.9 211 69.2
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 7.7e-68 261.2 203 67.5
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 7.7e-68 261.2 203 67.5
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.2e-65 253.8 197 67.0
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 1.4e-64 250.4 206 66.0
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.8e-64 250.0 199 66.8
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.0e-64 249.2 201 67.2
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.2e-63 247.3 192 66.7
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 9.8e-63 244.2 190 65.3
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 2.2e-62 243.0 190 65.3
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.2e-62 243.0 223 59.2
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 3.7e-62 242.3 213 65.3
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.8e-61 240.0 189 66.7
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.8e-61 240.0 200 63.5
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.6e-60 236.9 201 62.7
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 2.7e-60 236.1 198 66.2
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 2.7e-60 236.1 189 64.6
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 5.9e-60 235.0 187 63.6
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 5.9e-60 235.0 197 63.5
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.9e-59 232.6 210 59.0
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 2.9e-59 232.6 194 63.4
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 3.9e-59 232.3 190 65.3
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 3.9e-59 232.3 190 65.3
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 5.0e-59 231.9 200 61.5
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 8.6e-59 231.1 211 57.8
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.1e-58 230.7 189 64.6
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.5e-58 230.3 196 62.2
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.9e-58 229.9 210 60.0
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.6e-58 228.4 209 59.3
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 7.3e-58 228.0 195 61.5
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.2e-57 227.3 192 62.5
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.6e-57 226.9 195 62.6
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 2.1e-57 226.5 189 65.1
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.8e-57 226.1 203 62.6
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.8e-57 226.1 196 60.2
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.4e-56 223.8 203 62.1
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.4e-56 223.8 200 60.0
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.4e-56 223.8 194 64.4
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.8e-56 223.4 185 63.8
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.3e-56 223.0 185 63.8
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.8e-56 221.5 201 61.2
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 8.9e-56 221.1 194 61.3
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.5e-55 220.3 185 63.8
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 2.0e-55 219.9 185 57.8
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.0e-55 219.9 190 62.1
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 2.6e-55 219.5 196 60.7
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 2.6e-55 219.5 202 55.0
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.4e-55 218.8 210 54.8
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 4.4e-55 218.8 200 56.5
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 7.5e-55 218.0 206 53.9
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 9.8e-55 217.6 195 64.6
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.7e-54 216.9 206 53.4
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.1e-53 214.2 216 55.1
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.4e-53 213.8 203 55.2
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.4e-53 213.8 197 58.4
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 2.4e-53 213.0 189 61.9
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 4.1e-53 212.2 200 56.5
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 5.4e-53 211.8 206 57.8
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.6e-52 208.8 189 60.3
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.0e-51 207.6 201 55.7
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-51 207.2 201 55.7
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.3e-51 206.5 187 58.8
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.3e-51 206.5 195 57.9
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 3.0e-51 206.1 201 55.7
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 6.6e-51 204.9 194 57.2
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 8.6e-51 204.5 192 60.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.1e-50 204.1 202 54.5
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.5e-50 203.8 198 53.5
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.5e-50 203.8 210 55.2
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.9e-50 203.4 188 60.6
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 2.5e-50 203.0 206 54.4
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.5e-50 203.0 194 56.7
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 7.3e-50 201.4 202 53.5
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.1e-49 199.9 227 51.1
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.7e-49 198.7 197 56.9
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.1e-48 197.6 200 52.5
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.4e-48 197.2 211 52.1
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 3.1e-48 196.1 200 53.0
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 3.1e-48 196.1 199 53.8
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 3.1e-48 196.1 200 54.0
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 5.2e-48 195.3 212 49.5
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.5e-47 193.7 202 54.0
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 2.6e-47 193.0 181 58.6
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.6e-47 193.0 207 54.1
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 4.4e-47 192.2 197 54.3
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 4.4e-47 192.2 213 49.8
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.3e-46 190.7 200 53.0
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 3.7e-46 189.1 212 49.1
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 3.7e-46 189.1 183 55.2
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 4.9e-46 188.7 212 48.6
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.4e-45 187.2 179 56.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.9e-45 186.8 189 54.0
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 9.2e-45 184.5 180 54.4
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 3.5e-44 182.6 223 48.0
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.7e-43 180.3 183 53.0
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 1.9e-42 176.8 216 49.5
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 3.3e-42 176.0 196 48.0
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.3e-42 175.6 180 52.8
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 6.2e-41 171.8 191 48.7
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.4e-40 170.6 164 58.5
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.5e-39 167.2 189 49.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.0e-39 166.8 191 50.8
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.6e-39 166.4 188 47.3
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 7.5e-39 164.9 190 50.5
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.4e-37 160.6 178 48.3
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 7.1e-37 158.3 190 48.4
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 2.7e-36 156.4 135 56.3
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 2.7e-36 156.4 212 45.3
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 2.3e-35 153.3 194 46.4
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 8.6e-35 151.4 177 46.9
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 3.3e-34 149.4 186 46.2
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 4.3e-34 149.1 193 45.6
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 2.1e-33 146.7 189 45.5
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.1e-32 144.4 184 44.6
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.4e-32 143.3 206 44.2
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 6.8e-32 141.7 208 43.8
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 9.9e-31 137.9 124 62.1
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 9.9e-31 137.9 195 44.1
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 3.8e-30 136.0 181 44.2
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 6.4e-30 135.2 106 65.1
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.0e-27 127.9 158 45.6
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 2.8e-25 119.8 125 52.0
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.1e-21 107.8 151 43.0
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 7.1e-21 105.1 174 38.5
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.7e-19 100.5 187 36.9
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 4.9e-14 82.4 141 38.3
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.4e-14 81.6 162 30.9
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.1e-13 81.3 163 30.7
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.3e-13 78.2 162 33.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 7.9e-12 75.1 100 43.0
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.7e-11 71.6 162 29.0
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 7.4e-10 68.6 194 29.4
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 6.2e-09 65.5 155 32.3
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 6.2e-09 65.5 155 32.3
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 6.2e-09 65.5 155 32.3
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 6.2e-09 65.5 155 32.3
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 6.2e-09 65.5 155 32.3
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 1.4e-08 64.3 155 31.6
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.4e-08 64.3 155 31.0
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 3.1e-08 63.2 155 31.6
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 9.0e-08 61.6 171 28.7
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 2.6e-07 60.1 103 44.7
TAR622G0673 Trochodendron aralioides HOM05D001735 ORTHO05D001640 3.4e-07 59.7 162 29.6
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 1.3e-06 57.8 159 27.0
Lj5C98T5 Lonicera japonica HOM05D001735 ORTHO05D001640 1.3e-06 57.8 152 29.6
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 1.3e-06 57.8 148 31.1
CAN.G352.44 Capsicum annuum HOM05D001735 ORTHO05D001640 1.7e-06 57.4 163 30.7
Solyc03g111100.1 Solanum lycopersicum HOM05D001735 ORTHO05D001640 3.8e-06 56.2 165 31.5
CDE09G1341 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 4.9e-06 55.8 155 27.1
DCAR_007476 Daucus carota HOM05D001735 ORTHO05D001640 4.9e-06 55.8 200 27.5
Nitab4.5_0010847g0010 Nicotiana tabacum HOM05D001735 ORTHO05D001640 6.4e-06 55.5 165 30.3


User provided reference genes

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