Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 1.7e-70 269.2 135 100.0
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 2.0e-60 235.7 170 75.3
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 6.2e-57 224.2 170 72.9
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 3.5e-44 181.8 170 62.9
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.0e-43 180.3 162 65.4
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 3.5e-36 155.2 176 54.5
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.9e-34 149.4 172 52.9
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 7.3e-34 147.5 182 50.5
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.2e-33 146.7 179 50.8
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.6e-33 146.4 181 50.3
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.6e-33 146.4 171 53.8
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.8e-33 145.6 174 51.1
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 4.7e-33 144.8 163 53.4
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 6.2e-33 144.4 179 52.5
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 8.1e-33 144.1 182 50.5
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.1e-32 143.7 155 54.8
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.1e-32 143.7 155 54.8
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.1e-32 143.7 181 48.1
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 2.4e-32 142.5 178 49.4
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.4e-32 142.5 152 56.6
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 3.1e-32 142.1 182 49.5
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.1e-32 142.1 182 49.5
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 4.0e-32 141.7 176 51.1
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.0e-32 141.7 181 49.2
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.0e-31 139.4 176 48.9
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 2.0e-31 139.4 175 49.7
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.6e-31 139.0 163 50.3
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.6e-31 139.0 149 55.7
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.6e-31 139.0 170 49.4
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 3.4e-31 138.7 168 51.8
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 4.4e-31 138.3 176 48.9
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 4.4e-31 138.3 162 50.6
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 5.8e-31 137.9 172 48.8
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 7.6e-31 137.5 180 48.3
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 7.6e-31 137.5 173 49.1
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.3e-30 136.7 181 44.8
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.7e-30 136.3 166 50.0
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.9e-30 135.6 176 49.4
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 2.9e-30 135.6 171 48.0
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 4.9e-30 134.8 169 48.5
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.4e-30 134.4 181 45.3
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 8.4e-30 134.0 177 50.8
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.9e-29 132.9 147 55.1
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.9e-29 132.9 177 48.6
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 5.4e-29 131.3 172 49.4
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 7.1e-29 131.0 174 45.4
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 9.3e-29 130.6 182 47.8
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 9.3e-29 130.6 181 45.3
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 1.2e-28 130.2 163 50.9
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.6e-28 129.8 168 50.0
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 2.1e-28 129.4 180 46.1
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.7e-28 129.0 177 47.5
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 2.7e-28 129.0 167 47.9
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.0e-27 127.1 183 44.3
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.3e-27 125.9 175 47.4
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 3.9e-27 125.2 194 41.8
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 5.1e-27 124.8 157 49.0
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 8.7e-27 124.0 185 45.4
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.5e-26 123.2 211 41.7
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 1.5e-26 123.2 162 47.5
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 2.5e-26 122.5 152 48.0
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 3.3e-26 122.1 187 42.8
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.6e-25 119.8 124 55.6
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.6e-25 119.8 176 44.9
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.6e-25 119.8 151 47.7
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.8e-25 119.0 241 38.2
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.8e-25 119.0 140 52.1
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.8e-25 119.0 164 45.1
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 3.6e-25 118.6 150 46.7
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 4.8e-25 118.2 117 59.0
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 6.2e-25 117.9 151 46.4
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 6.2e-25 117.9 117 57.3
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 6.2e-25 117.9 148 47.3
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 8.1e-25 117.5 168 43.5
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 8.1e-25 117.5 147 49.7
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 8.1e-25 117.5 177 44.1
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.1e-24 117.1 170 44.7
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.1e-24 117.1 174 41.4
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.4e-24 116.7 172 41.9
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.4e-24 116.7 175 44.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.8e-24 116.3 160 46.9
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.4e-24 115.9 171 43.9
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.4e-24 115.9 174 42.5
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 4.0e-24 115.2 150 46.0
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 4.0e-24 115.2 150 46.0
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 4.0e-24 115.2 175 41.7
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.0e-24 115.2 182 43.4
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 5.3e-24 114.8 150 44.7
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 5.3e-24 114.8 150 44.7
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 5.3e-24 114.8 168 43.5
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 5.3e-24 114.8 154 47.4
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 5.3e-24 114.8 162 45.1
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 5.3e-24 114.8 168 44.0
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 5.3e-24 114.8 178 43.3
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 9.0e-24 114.0 169 43.2
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 9.0e-24 114.0 176 42.0
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.5e-23 113.2 168 42.9
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.5e-23 113.2 144 47.2
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.5e-23 113.2 144 47.2
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.7e-22 109.8 184 38.6
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 8.4e-22 107.5 147 42.9
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 1.4e-21 106.7 119 49.6
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 1.4e-21 106.7 162 45.1
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 2.4e-21 105.9 179 40.8
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.2e-21 105.1 148 44.6
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.1e-20 102.8 162 39.5
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 2.1e-20 102.8 180 39.4
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 4.6e-20 101.7 146 41.8
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 8.7e-19 97.4 137 49.6
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 8.7e-19 97.4 228 32.9
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 5.6e-18 94.7 117 45.3
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.3e-17 93.6 136 41.9
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.8e-16 89.7 120 45.0
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 1.8e-16 89.7 141 38.3
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 2.4e-16 89.4 122 45.1
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 2.4e-16 89.4 122 45.1
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 2.4e-16 89.4 122 45.1
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.4e-16 89.4 119 43.7
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 3.1e-16 89.0 115 46.1
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.1e-16 89.0 140 39.3
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.0e-15 86.3 155 38.1
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.0e-15 86.3 155 38.1
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 2.6e-15 85.9 159 35.8
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.6e-15 85.9 99 45.5
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 2.6e-15 85.9 47 74.5
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 7.6e-15 84.3 146 37.7
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.9e-14 81.6 153 35.3
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 8.4e-14 80.9 128 40.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.1e-12 76.3 109 45.9
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.3e-09 67.0 57 63.2
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 9.0e-08 60.8 48 56.2
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.6e-07 59.3 96 37.5
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.7e-06 56.6 62 51.6
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.2e-06 56.2 101 41.6
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 4.9e-06 55.1 109 36.7


User provided reference genes

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