Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.7e-148 528.1 253 100.0
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.9e-132 475.3 246 91.9
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 3.9e-121 438.3 212 96.7
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.3e-116 423.3 253 79.4
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 6.7e-113 411.0 288 72.2
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.2e-101 373.6 256 69.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 8.4e-100 367.5 256 68.8
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.5e-99 364.8 257 68.1
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.1e-98 362.8 257 67.7
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.7e-98 362.5 257 68.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.9e-96 356.3 257 66.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 2.5e-96 355.9 257 67.7
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.3e-95 353.6 242 69.4
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.3e-95 353.6 250 67.2
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 4.8e-95 351.7 257 68.1
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 8.2e-95 350.9 256 68.4
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.4e-94 350.1 256 65.2
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 3.1e-94 349.0 256 68.0
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 5.3e-94 348.2 254 66.1
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.0e-94 347.4 249 66.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.2e-93 347.1 262 66.4
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.5e-93 346.7 251 66.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 2.6e-93 345.9 262 66.4
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-93 345.9 262 66.4
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 3.4e-93 345.5 252 65.9
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 3.4e-93 345.5 261 66.3
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-92 343.6 256 66.0
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.2e-92 342.8 255 66.3
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.8e-92 342.0 253 64.8
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.5e-92 340.9 256 65.2
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.4e-91 340.1 252 67.1
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.9e-91 339.7 254 63.4
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.9e-91 339.7 253 63.6
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.2e-91 339.0 251 64.1
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 4.2e-91 338.6 252 67.5
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 9.3e-91 337.4 255 66.7
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.1e-90 336.3 263 64.6
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.1e-90 336.3 251 64.1
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 4.6e-90 335.1 259 62.5
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.0e-89 334.0 263 62.7
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.9e-89 332.0 255 63.9
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 8.7e-89 330.9 218 71.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.1e-88 330.5 253 65.6
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.5e-88 330.1 253 65.6
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.5e-88 330.1 259 63.3
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.5e-88 330.1 254 60.6
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.9e-88 329.7 255 63.1
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.5e-88 329.3 255 63.5
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 3.3e-88 328.9 179 82.1
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 4.3e-88 328.6 262 59.5
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 5.7e-88 328.2 259 61.8
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 5.7e-88 328.2 262 59.5
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 5.7e-88 328.2 261 62.8
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 9.7e-88 327.4 179 84.9
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.3e-87 327.0 243 63.8
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.6e-87 326.6 257 59.9
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.8e-87 325.9 261 57.1
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.8e-87 325.9 257 59.9
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 3.7e-87 325.5 259 63.3
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.8e-87 325.1 251 61.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.3e-87 324.7 255 62.4
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 8.2e-87 324.3 257 61.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 8.2e-87 324.3 259 59.8
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 8.2e-87 324.3 241 62.7
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.4e-86 322.8 252 61.9
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 4.1e-86 322.0 256 62.1
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 5.3e-86 321.6 257 61.9
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 5.3e-86 321.6 256 59.4
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 6.9e-86 321.2 254 60.2
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 9.1e-86 320.9 257 61.5
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 4.5e-85 318.5 254 62.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 7.7e-85 317.8 257 62.3
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.7e-84 316.6 182 78.0
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 2.2e-84 316.2 266 58.6
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.2e-84 316.2 254 61.4
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.2e-84 316.2 256 61.3
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.9e-84 315.8 260 60.0
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 5.0e-84 315.1 261 59.0
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.9e-83 313.2 257 60.3
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.5e-83 312.8 182 76.4
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.2e-83 312.4 265 58.1
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 4.2e-83 312.0 267 57.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 5.5e-83 311.6 251 58.2
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 9.4e-83 310.8 255 60.8
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.2e-82 310.5 263 59.3
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 2.7e-82 309.3 254 61.4
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.6e-82 308.9 261 57.9
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 4.6e-82 308.5 256 61.3
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 4.6e-82 308.5 257 63.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 7.9e-82 307.8 259 59.5
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 6.7e-81 304.7 178 75.3
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.3e-79 300.4 251 61.0
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.7e-79 300.1 261 59.4
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 2.8e-79 299.3 253 57.7
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.7e-79 298.9 258 57.0
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 4.8e-79 298.5 253 56.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 6.3e-79 298.1 244 61.9
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 6.3e-79 298.1 178 74.7
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.1e-78 297.4 257 58.8
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.8e-78 296.6 247 58.3
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 4.1e-78 295.4 247 58.7
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 5.3e-78 295.0 257 58.4
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 9.1e-78 294.3 172 77.3
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 9.1e-78 294.3 172 77.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.6e-77 292.7 251 58.6
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.6e-77 292.7 251 58.6
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 3.4e-77 292.4 251 57.0
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 7.7e-77 291.2 254 57.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.0e-76 290.8 256 58.6
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.0e-76 290.8 252 57.1
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 2.2e-76 289.7 245 58.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 2.9e-76 289.3 220 63.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.8e-76 288.9 251 57.0
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 6.5e-76 288.1 249 57.8
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 3.2e-75 285.8 217 65.4
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.1e-74 283.1 251 55.8
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.4e-73 280.4 214 64.5
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.0e-73 279.3 195 64.6
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.8e-73 277.7 150 85.3
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.6e-72 276.2 253 54.5
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 3.3e-72 275.8 245 57.6
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.7e-71 273.5 204 64.2
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 6.3e-71 271.6 250 55.6
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.8e-70 270.0 251 53.0
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 7.0e-70 268.1 256 55.5
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.6e-69 266.9 237 58.6
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.0e-68 264.2 145 82.8
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.1e-67 260.8 219 60.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 2.6e-64 249.6 256 52.0
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 2.6e-64 249.6 217 55.8
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.3e-63 245.0 254 52.0
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.8e-62 243.4 141 76.6
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.3e-62 241.9 261 50.2
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.8e-60 235.7 152 73.0
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.4e-57 227.3 164 63.4
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 6.8e-57 224.9 254 45.7
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 8.8e-57 224.6 195 53.8
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 4.4e-56 222.2 164 61.6
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 4.1e-54 215.7 170 60.0
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 5.4e-54 215.3 260 46.9
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.2e-53 214.2 178 54.5
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.5e-53 212.2 144 66.7
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 7.7e-53 211.5 192 52.6
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.5e-51 206.5 111 83.8
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 4.6e-37 159.1 143 58.0
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.0e-36 157.9 212 45.3
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.2e-34 151.0 94 70.2
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 5.2e-33 145.6 84 77.4
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.3e-31 141.0 103 68.0
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.3e-28 130.2 128 50.0
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 3.9e-28 129.4 88 65.9
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 5.0e-28 129.0 213 33.3
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.6e-26 124.0 115 56.5
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.1e-25 119.8 73 74.0
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 5.8e-24 115.5 78 67.9
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 1.7e-23 114.0 141 40.4
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 1.1e-22 111.3 65 75.4
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.1e-19 101.3 65 69.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.1e-17 93.2 86 53.5
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.4e-14 84.3 48 77.1
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.4e-14 82.4 46 78.3
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.7e-12 77.4 39 82.1
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.0e-12 76.6 46 73.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.0e-12 76.6 46 73.9
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 4.3e-11 72.8 100 40.0
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.4e-09 67.0 43 72.1
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 2.9e-07 60.1 36 69.4


User provided reference genes

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