Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1948.7 990 100.0
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1786.5 971 94.1
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1663.7 950 88.8
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1657.9 953 88.8
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1620.9 885 93.3
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1390.2 960 74.2
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1359.7 957 73.0
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1351.7 958 72.4
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1350.1 958 72.3
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1335.5 965 71.3
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1334.7 956 71.7
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1334.3 967 71.4
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1331.2 964 70.9
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1326.6 972 70.5
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1320.4 961 71.0
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1306.6 963 70.4
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1303.5 962 69.1
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1299.6 957 70.0
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1293.9 962 69.8
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1284.6 967 69.1
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1279.6 960 69.2
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1278.8 964 68.8
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1278.5 973 69.7
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1278.1 923 71.4
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1277.7 957 69.0
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1264.2 970 67.9
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1261.5 972 68.3
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1261.1 955 68.7
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1260.7 966 68.8
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1257.7 955 68.5
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1257.3 963 68.3
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1256.9 957 66.9
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1255.7 955 68.0
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1255.4 959 68.7
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1255.4 957 66.8
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1254.6 959 68.7
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1254.2 957 66.5
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1252.3 954 67.4
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1251.9 958 68.5
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1250.3 961 66.8
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1248.0 955 68.5
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1247.3 954 66.6
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1246.5 924 70.2
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1246.5 949 68.3
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1246.1 960 67.2
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1245.3 962 67.0
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1244.2 954 67.0
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1243.4 963 67.5
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1243.4 974 66.0
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1241.5 954 67.3
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1239.6 956 67.1
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1239.2 953 67.4
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1237.6 953 66.8
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1237.2 954 67.1
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1236.1 956 67.1
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1235.7 956 67.1
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1235.3 960 67.0
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1233.8 950 66.6
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1233.4 964 66.7
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1228.4 977 64.0
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1227.6 955 66.0
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1224.2 966 67.0
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1224.2 966 67.0
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1224.2 924 69.3
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1215.3 960 66.1
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1212.6 972 63.6
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1211.4 960 64.4
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1211.1 960 66.7
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1209.1 959 66.5
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1208.4 958 65.0
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1208.4 972 65.6
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1204.5 953 65.0
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1204.1 956 65.7
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1191.0 954 65.1
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1187.9 929 67.2
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1182.2 975 63.3
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1178.7 959 64.1
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1166.4 954 65.2
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1165.2 954 64.4
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1156.0 953 63.6
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1151.0 931 64.7
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1140.6 954 62.2
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1129.4 983 61.2
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1118.2 973 60.3
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 0.0e+00 1104.7 884 64.5
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1085.9 956 59.9
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 2.7e-311 1072.0 858 65.4
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 5.1e-310 1067.8 987 57.5
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 3.7e-308 1061.6 927 59.5
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 3.1e-307 1058.5 962 59.1
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 1.3e-297 1026.5 865 64.0
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 6.1e-295 1017.7 928 61.1
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 6.5e-289 997.7 788 66.5
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 9.4e-288 993.8 960 57.0
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 2.1e-263 912.9 779 61.9
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 4.3e-256 888.6 780 61.8
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 4.1e-251 872.1 841 55.9
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 2.5e-232 809.7 766 57.8
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 2.2e-228 796.6 997 45.5
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 1.4e-214 750.7 961 45.1
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 2.5e-208 729.9 962 44.7
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 1.5e-192 677.6 536 64.4
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 1.8e-190 670.6 976 42.0
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 3.2e-187 659.8 659 54.9
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 9.1e-182 641.7 584 60.3
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 7.2e-179 632.1 593 57.0
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 2.5e-163 580.5 470 64.5
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.5e-160 571.2 744 46.1
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 5.2e-113 413.3 494 49.8
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 1.3e-111 408.7 1075 30.9
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-100 371.7 340 60.9
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-100 371.7 340 60.9
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-100 371.7 340 60.9
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 2.1e-98 364.8 204 84.8
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 6.4e-95 353.2 314 58.6
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 7.6e-88 329.7 180 86.1
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 3.2e-78 297.7 169 80.5
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 9.3e-78 296.2 156 87.2
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.1e-73 282.7 156 82.1
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 6.9e-73 280.0 254 62.2
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 1.2e-72 279.3 243 63.8
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 2.7e-69 268.1 151 82.1
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 6.1e-69 266.9 277 57.0
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 1.1e-62 246.1 128 86.7
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 1.8e-49 202.2 175 62.3
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 3.5e-48 198.0 110 83.6
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 1.0e-44 186.4 459 31.6
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 2.3e-44 185.3 103 82.5
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 5.7e-43 180.6 265 40.0
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 2.7e-24 118.6 191 43.5
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.3e-22 111.3 268 28.0
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.0e-21 107.1 300 29.3
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 1.1e-20 106.7 100 61.0
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.3e-20 105.5 287 29.3
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.8e-20 104.0 282 29.1
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-19 103.2 272 29.4
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.5e-19 102.8 268 28.4
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.4e-19 101.3 264 28.4
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 9.8e-19 100.1 269 28.3
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-18 99.8 281 29.2
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.9e-17 95.9 284 28.9
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.0e-16 92.4 277 28.9
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 6.0e-16 90.9 276 28.3
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-15 89.7 278 27.7
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 8.6e-15 87.0 244 31.1
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 1.5e-14 86.3 46 82.6
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 4.3e-14 84.7 62 67.7
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.6e-14 84.3 153 34.0
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 7.3e-14 84.0 294 24.8
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.6e-13 82.8 300 25.0
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.4e-12 79.7 61 68.9
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 5.2e-12 77.8 265 26.0
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.3e-10 73.2 291 24.7
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 1.3e-10 73.2 320 25.6
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.7e-10 72.8 319 24.8
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.2e-10 72.4 155 31.0
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 2.4e-09 68.9 147 30.6
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 4.1e-09 68.2 94 41.5
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 7.1e-09 67.4 64 56.2
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 9.2e-09 67.0 273 26.0
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 9.2e-09 67.0 38 76.3
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 1.2e-08 66.6 271 25.8
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 1.6e-08 66.2 255 24.3
Mapoly0147s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253211 1.6e-08 66.2 323 24.8
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 2.1e-08 65.9 272 26.8
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 2.1e-08 65.9 160 30.0
Mapoly0062s0059 Marchantia polymorpha HOM05D000005 ORTHO05D000239 2.7e-08 65.5 178 30.9
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.0e-07 62.0 257 24.5
Psat0s4914g0040 Pisum sativum HOM05D001376 ORTHO05D003384 3.0e-07 62.0 53 62.3
Mapoly0147s0002 Marchantia polymorpha HOM05D020945 ORTHO05D251377 3.9e-07 61.6 293 26.3
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 5.1e-07 61.2 179 30.2
Aa31LG2G16190 Aethionema arabicum HOM05D004348 ORTHO05D006191 6.6e-07 60.8 32 84.4
Cfa022866 Carpinus fangiana HOM05D012225 ORTHO05D125906 6.6e-07 60.8 231 23.4
Cfa022816 Carpinus fangiana HOM05D012225 ORTHO05D124422 8.6e-07 60.5 210 28.1
Mapoly0016s0166 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-06 60.1 198 26.3
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 5.6e-06 57.8 46 58.7
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 7.3e-06 57.4 257 23.7
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 7.3e-06 57.4 257 23.7


User provided reference genes

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