Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 0.0e+00 2798.5 1372 100.0
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 0.0e+00 2429.1 1394 86.5
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 0.0e+00 2124.4 1322 80.0
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 0.0e+00 1867.8 1381 69.7
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 0.0e+00 1114.4 1405 44.4
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 0.0e+00 1086.6 1409 44.9
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 9.4e-312 1074.3 1427 43.4
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 1.2e-309 1067.0 1403 44.4
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 2.9e-303 1045.8 1402 43.4
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 1.8e-300 1036.6 1415 44.2
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 5.1e-300 1035.0 1423 44.2
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 2.5e-299 1032.7 1409 42.2
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 5.3e-297 1025.0 1423 43.9
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 6.9e-297 1024.6 1406 43.1
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 2.5e-294 1016.1 1401 41.8
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 7.4e-291 1004.6 1478 41.1
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 4.8e-290 1001.9 1418 42.5
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 1.9e-286 989.9 1409 41.2
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.0e-284 982.6 1447 42.2
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 6.7e-268 928.3 1397 39.9
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 8.8e-268 927.9 1241 44.2
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 1.7e-266 923.7 1411 40.4
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 7.2e-262 908.3 1404 40.4
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 1.6e-256 890.6 1434 39.1
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 1.5e-254 884.0 1407 39.4
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 3.2e-254 882.9 1406 38.6
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 3.6e-253 879.4 1444 37.7
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 3.7e-250 869.4 1399 38.9
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 5.5e-246 855.5 1412 38.7
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 1.6e-245 854.0 1420 38.7
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 1.8e-244 850.5 1403 38.8
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 3.0e-244 849.7 1407 38.3
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 8.8e-244 848.2 1378 39.2
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 2.0e-235 820.5 1389 38.7
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 2.7e-232 810.1 1419 36.9
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 2.7e-232 810.1 1381 37.9
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.4e-225 787.7 1417 38.5
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 3.6e-221 773.1 1402 34.8
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 2.3e-220 770.4 1399 35.5
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 6.0e-216 755.7 1409 35.7
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 6.0e-216 755.7 1403 35.5
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 1.7e-215 754.2 1406 36.4
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 6.6e-215 752.3 1406 35.2
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 1.6e-213 747.7 1231 38.3
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 8.9e-212 741.9 1432 35.5
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 8.4e-210 735.3 1414 35.2
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.9e-209 734.2 1411 36.3
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 4.1e-209 733.0 1410 36.5
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 3.0e-207 726.9 1396 34.7
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 6.2e-205 719.2 1373 35.7
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 1.6e-200 704.5 1407 35.9
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 3.9e-199 699.9 1402 34.5
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 5.1e-199 699.5 1396 33.6
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 7.3e-198 695.7 1404 34.8
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 3.0e-191 673.7 1392 33.3
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 5.1e-191 672.9 1396 33.6
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 8.7e-191 672.2 1407 34.4
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 2.6e-187 660.6 1406 34.2
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 1.1e-185 655.2 1383 33.8
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 1.4e-185 654.8 1396 33.1
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 5.5e-185 652.9 1384 34.8
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 9.3e-185 652.1 1159 35.5
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 7.9e-184 649.0 1373 34.2
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 7.9e-184 649.0 1373 34.2
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 5.1e-183 646.4 1388 32.7
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 2.5e-182 644.0 1373 34.2
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 4.3e-182 643.3 1377 34.1
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 1.3e-181 641.7 1385 34.2
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 2.8e-181 640.6 1383 34.0
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 1.7e-178 631.3 1413 32.0
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 4.2e-177 626.7 1160 35.1
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.5e-174 618.2 1162 34.9
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 2.4e-172 610.9 1509 31.6
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 3.3e-166 590.5 1230 34.2
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 1.8e-159 568.2 1402 31.5
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 6.7e-159 566.2 1213 33.0
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 1.3e-157 562.0 971 37.1
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 3.8e-154 550.4 1110 33.7
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 1.2e-152 545.4 1015 36.3
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 6.5e-146 523.1 1517 28.9
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 5.5e-129 466.8 1426 30.4
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.0e-127 462.6 833 36.9
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 1.4e-127 462.2 1324 28.9
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 4.0e-119 434.1 948 32.3
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 1.5e-113 415.6 1404 28.1
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 4.7e-104 384.0 480 46.2
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 2.0e-102 378.6 809 33.0
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.4e-102 377.9 365 53.2
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 1.3e-98 365.9 424 47.4
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 1.3e-98 365.9 410 45.9
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 6.6e-98 363.6 449 43.7
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 7.8e-83 313.5 365 47.7
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.5e-81 309.3 281 54.1
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 8.1e-80 303.5 644 32.8
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 9.0e-79 300.1 385 43.9
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 3.4e-78 298.1 820 30.4
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 4.8e-72 277.7 351 44.2
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.7e-69 269.2 253 53.0
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.3e-64 253.1 387 39.5
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 5.5e-60 237.7 487 33.9
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 8.2e-56 223.8 217 52.1
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 4.1e-55 221.5 383 36.3
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 6.9e-55 220.7 1338 22.7
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 3.8e-53 214.9 648 28.9
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 4.8e-48 198.0 273 44.0
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 5.3e-47 194.5 679 25.2
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 2.9e-45 188.7 706 24.6
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 1.1e-41 176.8 601 28.0
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 9.7e-41 173.7 410 33.9
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 2.6e-38 165.6 197 44.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 4.5e-38 164.9 679 24.2
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 3.2e-36 158.7 271 36.9
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 2.7e-35 155.6 114 62.3
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 5.0e-29 134.8 209 39.2
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 5.5e-28 131.3 608 24.2
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 2.7e-27 129.0 215 38.1
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.0e-26 127.1 194 38.7
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 1.7e-24 119.8 167 39.5
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.7e-21 109.8 275 32.0
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 3.6e-19 102.1 273 31.5
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 1.5e-17 96.7 57 70.2
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 5.7e-17 94.7 296 29.1
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 1.0e-13 84.0 51 66.7
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 8.6e-13 80.9 215 29.3
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 7.8e-06 57.8 76 39.5


User provided reference genes

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