Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G033550 Cucumis sativus L. HOM05D007784 ORTHO05D008654 1.3e-92 343.6 259 100.0
MELO3C025600.2 Cucumis melo HOM05D007784 ORTHO05D008654 1.6e-85 320.1 260 88.8
ClCG11G017920 Citrullus lanatus HOM05D007784 ORTHO05D008654 3.3e-75 285.8 256 75.4
QL08p022546 Quercus lobata HOM05D007784 ORTHO05D008654 2.6e-35 153.3 244 49.6
Prupe.4G177000 Prunus persica HOM05D007784 ORTHO05D008654 9.7e-35 151.4 242 48.3
MD03G1230800 Malus domestica HOM05D007784 ORTHO05D008654 1.8e-33 147.1 242 49.2
Cfa020564 Carpinus fangiana HOM05D007784 ORTHO05D008654 2.9e-31 139.8 250 47.6
CiPaw.11G171500 Carya illinoinensis HOM05D007784 ORTHO05D008654 2.1e-29 133.7 244 45.9
Duzib213G0720 Durio zibethinus HOM05D007784 ORTHO05D008654 2.7e-29 133.3 255 44.7
Thecc.07G095100 Theobroma cacao HOM05D007784 ORTHO05D008654 6.1e-29 132.1 245 46.5
COL.COLO4_36703 Corchorus olitorius HOM05D007784 ORTHO05D008654 1.5e-27 127.5 251 45.8
CiPaw.12G119800 Carya illinoinensis HOM05D007784 ORTHO05D008654 1.7e-26 124.0 238 46.6
Cpa.g.c36086 Carica papaya HOM05D007784 ORTHO05D008654 2.2e-26 123.6 252 49.6
Gohir.A01G061700 Gossypium hirsutum HOM05D007784 ORTHO05D008654 8.3e-26 121.7 239 46.9
Gohir.D01G048300 Gossypium hirsutum HOM05D007784 ORTHO05D008654 1.1e-25 121.3 239 46.9
Gorai.002G068100 Gossypium raimondii HOM05D007784 ORTHO05D008654 1.1e-25 121.3 239 46.9
Duzib268G0159 Durio zibethinus HOM05D007784 ORTHO05D008654 1.2e-24 117.9 244 43.4
Potri.011G116600 Populus trichocarpa HOM05D007784 ORTHO05D008654 1.2e-24 117.9 248 44.4
CSS0002410 Camellia sinensis var. sinensis HOM05D007784 ORTHO05D008654 1.6e-24 117.5 239 44.8
RcHm_v2.0_Chr5g0032821 Rosa chinensis HOM05D007784 ORTHO05D008654 1.6e-24 117.5 248 52.8
Potri.001G398000 Populus trichocarpa HOM05D007784 ORTHO05D008654 2.2e-23 113.6 254 42.1
Sabra11G0102100 Salix brachista HOM05D007784 ORTHO05D008654 5.0e-23 112.5 252 42.5
CANSAT56G4083 Cannabis sativa HOM05D007784 ORTHO05D008654 1.5e-22 110.9 270 54.4
Haze_09448 Corylus avellana HOM05D007784 ORTHO05D008654 3.2e-22 109.8 86 72.1
Sabra16G0260800 Salix brachista HOM05D007784 ORTHO05D008654 5.5e-22 109.0 255 41.6
Ciclev10010505m.g Citrus clementina HOM05D007784 ORTHO05D008654 1.6e-21 107.5 244 43.4
FvH4_3g19630 Fragaria vesca HOM05D007784 ORTHO05D008654 4.7e-21 105.9 248 50.0
FAN11G2265 Fragaria x ananassa HOM05D007784 ORTHO05D008654 4.7e-21 105.9 248 50.0
Hma1.2p1_0387F.1_g141980 Hydrangea macrophylla HOM05D007784 ORTHO05D008654 4.7e-21 105.9 240 32.9
Manes.15G088900 Manihot esculenta HOM05D007784 ORTHO05D008654 4.7e-21 105.9 246 43.9
FAN21G3158 Fragaria x ananassa HOM05D007784 ORTHO05D008654 6.1e-21 105.5 248 48.4
FAN16G2579 Fragaria x ananassa HOM05D007784 ORTHO05D008654 1.8e-20 104.0 240 50.0
FAN25G3654 Fragaria x ananassa HOM05D007784 ORTHO05D008654 3.0e-20 103.2 248 52.0
Manes.03G106700 Manihot esculenta HOM05D007784 ORTHO05D008654 1.2e-19 101.3 243 42.8
Sed0023140 Sechium edule HOM05D007784 ORTHO05D008654 1.2e-19 101.3 55 87.3
Atru.chr2.2433 Acer truncatum HOM05D007784 ORTHO05D008654 1.5e-19 100.9 251 47.8
Lj3g0015921 Lotus japonicus HOM05D007784 ORTHO05D008654 4.4e-19 99.4 252 49.2
Glyma.12G163035 Glycine max HOM05D007784 ORTHO05D008654 1.3e-18 97.8 231 48.1
Gohir.D13G151926 Gossypium hirsutum HOM05D007784 ORTHO05D008654 4.8e-18 95.9 252 42.9
Ca_23050_v3 Cicer arietinum L. HOM05D007784 ORTHO05D008654 6.3e-18 95.5 233 44.6
Psat4g131560 Pisum sativum HOM05D007784 ORTHO05D008654 8.3e-18 95.1 238 32.8
PGR031G1623 Punica granatum HOM05D007784 ORTHO05D008654 1.1e-17 94.7 252 40.1
Lalb_Chr03g0030731 Lupinus albus HOM05D007784 ORTHO05D008654 1.4e-17 94.4 238 42.0
Glyma.06G238300 Glycine max HOM05D007784 ORTHO05D008654 4.1e-17 92.8 241 46.9
TWI38G0880 Tripterygium wilfordii HOM05D007784 ORTHO05D008654 1.6e-16 90.9 241 43.6
Cc05_g11830 Coffea canephora HOM05D007784 ORTHO05D008654 2.0e-16 90.5 250 41.6
Actinidia09697 Actinidia chinensis HOM05D007784 ORTHO05D008654 3.5e-16 89.7 242 41.7
Phvul.011G165000 Phaseolus vulgaris HOM05D007784 ORTHO05D008654 3.5e-16 89.7 232 44.8
Rhsim06G0201400 Rhododendron simsii HOM05D007784 ORTHO05D008654 1.3e-15 87.8 260 39.2
MSTRG.15239 Avicennia marina HOM05D007784 ORTHO05D008654 2.3e-15 87.0 233 41.2
VMungo1127G1039 Vigna mungo HOM05D007784 ORTHO05D008654 2.3e-15 87.0 234 43.6
Dinv14932 Davidia involucrata HOM05D007784 ORTHO05D008654 1.1e-14 84.7 88 55.7
Duzib170G0657 Durio zibethinus HOM05D007784 ORTHO05D008654 2.5e-14 83.6 76 60.5
CAN.G162.41 Capsicum annuum HOM05D007784 ORTHO05D008654 7.2e-14 82.0 251 32.7
Gorai.013G169700 Gossypium raimondii HOM05D007784 ORTHO05D008654 1.2e-13 81.3 190 48.9
Peaxi162Scf00069g01710 Petunia axillaris HOM05D007784 ORTHO05D008654 4.7e-13 79.3 89 53.9
Medtr0598s0020 Medicago truncatula HOM05D007784 ORTHO05D008654 8.0e-13 78.6 175 44.6
Oeu051079.1 Olea europaea HOM05D007784 ORTHO05D008654 8.0e-13 78.6 238 39.9
Aqoxy5G00008 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 1.8e-12 77.4 219 38.8
Aqoxy1G02344 Aquilegia oxysepala HOM05D007784 ORTHO05D008654 3.0e-12 76.6 219 38.4
TAR627G0175 Trochodendron aralioides HOM05D007784 ORTHO05D008654 4.0e-12 76.3 264 38.3
PGSC0003DMG400012442 Solanum tuberosum HOM05D007784 ORTHO05D008654 5.7e-11 72.4 249 36.9
TPR.G18874 Trifolium pratense HOM05D007784 ORTHO05D008654 1.3e-10 71.2 92 46.7
TAR627G0444 Trochodendron aralioides HOM05D007784 ORTHO05D008654 1.3e-10 71.2 264 39.0
Sc16g0007130 Simmondsia chinensis HOM05D007784 ORTHO05D008654 4.9e-10 69.3 233 40.8
Sp1g39710 Schrenkiella parvula HOM05D009851 ORTHO05D008654 8.3e-10 68.6 81 49.4
THA.LOC104810461 Tarenaya hassleriana HOM05D009851 ORTHO05D008654 8.3e-10 68.6 254 35.0
A06p01160 Brassica napus HOM05D009851 ORTHO05D008654 1.1e-09 68.2 85 48.2
BraA06t23343Z Brassica rapa HOM05D009851 ORTHO05D008654 2.4e-09 67.0 85 47.1
Solyc07g062960.1 Solanum lycopersicum HOM05D007784 ORTHO05D008654 2.4e-09 67.0 224 37.5
AT1G53163 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 3.2e-09 66.6 65 56.9
PSO541G4378 Papaver somniferum HOM05D007784 ORTHO05D008654 3.2e-09 66.6 66 59.1
BcaC08g43508 Brassica carinata HOM05D009851 ORTHO05D008654 5.4e-09 65.9 251 33.1
C06p08940 Brassica napus HOM05D009851 ORTHO05D008654 5.4e-09 65.9 251 33.1
BolC6t35972H Brassica oleracea HOM05D009851 ORTHO05D008654 5.4e-09 65.9 251 33.1
AL1G61530 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 9.2e-09 65.1 75 52.0
AL3G27640 Arabidopsis lyrata HOM05D009851 ORTHO05D008654 9.2e-09 65.1 252 31.0
BcaB07g33353 Brassica carinata HOM05D009851 ORTHO05D008654 9.2e-09 65.1 82 46.3
Carub.0003s1490 Capsella rubella HOM05D009851 ORTHO05D008654 9.2e-09 65.1 226 37.6
Sopen07g031150 Solanum pennellii HOM05D007784 ORTHO05D008654 9.2e-09 65.1 221 37.1
Thhalv10012165m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.2e-08 64.7 57 57.9
EL10Ac4g08222 Beta vulgaris HOM05D007784 ORTHO05D008654 1.6e-08 64.3 261 39.1
Lalb_Chr01g0006591 Lupinus albus HOM05D007784 ORTHO05D008654 2.7e-08 63.5 214 37.9
AUR62036175 Chenopodium quinoa HOM05D007784 ORTHO05D008654 4.5e-08 62.8 244 29.5
Carub.0001s4232 Capsella rubella HOM05D009851 ORTHO05D008654 5.9e-08 62.4 90 45.6
DCAR_017127 Daucus carota HOM05D007784 ORTHO05D008654 7.8e-08 62.0 226 34.1
BcaB03g11679 Brassica carinata HOM05D009851 ORTHO05D008654 1.0e-07 61.6 67 52.2
C05p51990 Brassica napus HOM05D009851 ORTHO05D008654 1.0e-07 61.6 67 52.2
Thhalv10021913m.g Eutrema salsugineum HOM05D009851 ORTHO05D008654 1.7e-07 60.8 63 54.0
CARHR090230 Cardamine hirsuta HOM05D009851 ORTHO05D008654 2.9e-07 60.1 223 30.9
AUR62019455 Chenopodium quinoa HOM05D007784 ORTHO05D008654 2.9e-07 60.1 67 55.2
PGR083G0236 Punica granatum HOM05D007784 ORTHO05D008654 3.9e-07 59.7 232 27.2
A05p34230 Brassica napus HOM05D009851 ORTHO05D008654 5.0e-07 59.3 67 49.3
BraA05t22243Z Brassica rapa HOM05D009851 ORTHO05D008654 5.0e-07 59.3 67 49.3
Sp3g13450 Schrenkiella parvula HOM05D009851 ORTHO05D008654 5.0e-07 59.3 216 35.2
AT3G15250 Arabidopsis thaliana HOM05D009851 ORTHO05D008654 6.6e-07 58.9 228 27.2
Migut.M00785 Erythranthe guttata HOM05D007784 ORTHO05D008654 6.6e-07 58.9 244 41.0
BolC5t33884H Brassica oleracea HOM05D009851 ORTHO05D008654 8.6e-07 58.5 67 50.7
SalBow8G3696 Salvia bowleyana HOM05D007784 ORTHO05D008654 1.9e-06 57.4 89 43.8
BcaB06g29548 Brassica carinata HOM05D009851 ORTHO05D008654 3.3e-06 56.6 222 33.3
CARHR043380 Cardamine hirsuta HOM05D009851 ORTHO05D008654 5.6e-06 55.8 64 48.4


User provided reference genes

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