Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G033500 Cucumis sativus L. HOM05D007892 ORTHO05D009211 2.4e-261 905.2 491 100.0
MELO3C025606.2 Cucumis melo HOM05D007892 ORTHO05D009211 3.5e-212 741.9 528 79.4
ClCG11G017870 Citrullus lanatus HOM05D007892 ORTHO05D009211 1.1e-192 677.2 535 73.6
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.1e-136 491.1 487 62.6
Cfa020559 Carpinus fangiana HOM05D007892 ORTHO05D009211 3.2e-40 170.6 520 35.4
Dinv20199 Davidia involucrata HOM05D007892 ORTHO05D009211 2.4e-35 154.5 540 34.4
FvH4_3g19480 Fragaria vesca HOM05D007892 ORTHO05D009211 2.6e-34 151.0 501 35.1
FAN11G1893 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.3e-33 148.7 501 34.3
FAN21G3246 Fragaria x ananassa HOM05D007892 ORTHO05D009211 1.9e-32 144.8 549 33.5
Haze_09454 Corylus avellana HOM05D007892 ORTHO05D009211 5.5e-32 143.3 511 32.7
FAN25G2763 Fragaria x ananassa HOM05D007892 ORTHO05D009211 7.2e-32 142.9 550 34.5
Prupe.4G176400 Prunus persica HOM05D007892 ORTHO05D009211 2.7e-31 141.0 512 33.0
RcHm_v2.0_Chr5g0032741 Rosa chinensis HOM05D007892 ORTHO05D009211 2.7e-31 141.0 398 33.9
CiPaw.11G172000 Carya illinoinensis HOM05D007892 ORTHO05D009211 2.3e-30 137.9 558 32.4
GSVIVG01014294001 Vitis vinifera HOM05D007892 ORTHO05D009211 2.3e-30 137.9 539 33.8
FAN16G1540 Fragaria x ananassa HOM05D007892 ORTHO05D009211 8.8e-30 136.0 549 33.5
CSS0005747 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.1e-29 135.6 474 33.8
CSS0030192 Camellia sinensis var. sinensis HOM05D007892 ORTHO05D009211 1.5e-29 135.2 474 33.8
CANSAT56G4073 Cannabis sativa HOM05D007892 ORTHO05D009211 2.8e-28 131.0 497 34.6
Thecc.07G095700 Theobroma cacao HOM05D007892 ORTHO05D009211 8.2e-28 129.4 557 31.8
Rhsim06G0202400 Rhododendron simsii HOM05D007892 ORTHO05D009211 1.4e-27 128.6 464 33.2
Eucgr.F01161 Eucalyptus grandis HOM05D007892 ORTHO05D009211 3.1e-27 127.5 550 30.5
TAR626G1218 Trochodendron aralioides HOM05D007892 ORTHO05D009211 9.1e-27 125.9 579 29.5
Lj3g0007189 Lotus japonicus HOM05D007892 ORTHO05D009211 5.9e-26 123.2 561 30.1
Glyma.12G226900 Glycine max HOM05D007892 ORTHO05D009211 2.9e-25 120.9 534 31.1
MD03G1231500 Malus domestica HOM05D007892 ORTHO05D009211 8.5e-25 119.4 544 32.0
Gohir.D01G048000 Gossypium hirsutum HOM05D007892 ORTHO05D009211 4.2e-24 117.1 518 30.5
Gorai.002G067800 Gossypium raimondii HOM05D007892 ORTHO05D009211 9.4e-24 115.9 579 30.2
Duzib213G0678 Durio zibethinus HOM05D007892 ORTHO05D009211 1.6e-23 115.2 624 29.8
MD11G1252600 Malus domestica HOM05D007892 ORTHO05D009211 4.7e-23 113.6 521 30.9
TWI38G1391 Tripterygium wilfordii HOM05D007892 ORTHO05D009211 6.1e-23 113.2 538 32.3
Ca_03530_v3 Cicer arietinum L. HOM05D007892 ORTHO05D009211 1.8e-22 111.7 575 28.2
QL08p022727 Quercus lobata HOM05D007892 ORTHO05D009211 3.0e-22 110.9 607 29.3
COL.COLO4_36713 Corchorus olitorius HOM05D007892 ORTHO05D009211 4.0e-22 110.5 605 30.2
Duzib268G0896 Durio zibethinus HOM05D007892 ORTHO05D009211 3.3e-21 107.5 661 28.7
vmacro11887 Vaccinium macrocarpon HOM05D007892 ORTHO05D009211 9.7e-21 105.9 453 32.9
AUR62019468 Chenopodium quinoa HOM05D007892 ORTHO05D009211 1.1e-19 102.4 435 31.3
Medtr2g078660 Medicago truncatula HOM05D007892 ORTHO05D009211 1.4e-19 102.1 493 27.2
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 5.3e-19 100.1 487 29.4
Ciclev10007798m.g Citrus clementina HOM05D007892 ORTHO05D009211 7.0e-19 99.8 518 30.3
HanXRQChr11g0351991 Helianthus annuus HOM05D007892 ORTHO05D009211 9.1e-19 99.4 439 31.7
VMungo0331G1677 Vigna mungo HOM05D007892 ORTHO05D009211 1.6e-18 98.6 527 29.6
Gohir.A01G061400 Gossypium hirsutum HOM05D007892 ORTHO05D009211 2.0e-18 98.2 555 29.0
Potri.011G115900 Populus trichocarpa HOM05D007892 ORTHO05D009211 2.0e-18 98.2 583 28.3
Lalb_Chr01g0016751 Lupinus albus HOM05D007892 ORTHO05D009211 2.7e-18 97.8 628 28.5
Manes.15G089300 Manihot esculenta HOM05D007892 ORTHO05D009211 1.7e-17 95.1 564 27.8
Oeu037370.2 Olea europaea HOM05D007892 ORTHO05D009211 2.2e-17 94.7 461 30.2
Dinv14936 Davidia involucrata HOM05D007892 ORTHO05D009211 2.9e-17 94.4 515 30.7
Phvul.010G112300 Phaseolus vulgaris HOM05D007892 ORTHO05D009211 1.9e-16 91.7 458 28.6
arahy.Tifrunner.gnm1.ann1.8Q202K Arachis hypogaea HOM05D007892 ORTHO05D009211 1.6e-15 88.6 569 27.4
Solyc07g062920.4 Solanum lycopersicum HOM05D021138 ORTHO05D009211 1.6e-15 88.6 544 29.4
AUR62036164 Chenopodium quinoa HOM05D007892 ORTHO05D009211 2.7e-15 87.8 443 28.7
Potri.001G397001 Populus trichocarpa HOM05D007892 ORTHO05D009211 6.1e-15 86.7 541 29.4
Glyma.13G273900 Glycine max HOM05D007892 ORTHO05D009211 1.0e-14 85.9 514 29.6
MSTRG.6820 Avicennia marina HOM05D007892 ORTHO05D009211 1.8e-14 85.1 394 29.2
PGSC0003DMG403012406 Solanum tuberosum HOM05D021138 ORTHO05D009211 5.2e-14 83.6 544 28.7
DCAR_019569 Daucus carota HOM05D007892 ORTHO05D009211 8.8e-14 82.8 415 28.7
Duzib244G0002 Durio zibethinus HOM05D007892 ORTHO05D009211 2.0e-13 81.6 663 27.8
Sed0010274 Sechium edule HOM05D007892 ORTHO05D009211 2.6e-13 81.3 458 27.7
Nn1g06449 Nelumbo nucifera HOM05D007892 ORTHO05D009211 4.4e-13 80.5 496 28.8
Sopen07g031110 Solanum pennellii HOM05D021138 ORTHO05D009211 5.7e-13 80.1 526 29.1
TPR.G7948 Trifolium pratense HOM05D007892 ORTHO05D009211 4.8e-12 77.0 73 60.3
ECA236G4021 Erigeron canadensis HOM05D000553 ORTHO05D009211 3.1e-11 74.3 75 58.7
Ah.06g184550 Amaranthus hybridus HOM05D007892 ORTHO05D009211 2.0e-10 71.6 444 28.4
arahy.Tifrunner.gnm1.ann1.N2Q107 Arachis hypogaea HOM05D007892 ORTHO05D009211 2.0e-10 71.6 166 34.9
Hund22811 Selenicereus undatus HOM05D007892 ORTHO05D009211 2.7e-10 71.2 505 29.9
THA.LOC104799933 Tarenaya hassleriana HOM05D012500 ORTHO05D009211 7.7e-10 69.7 310 30.6
Sc03g0010140 Simmondsia chinensis HOM05D007892 ORTHO05D009211 1.0e-09 69.3 424 28.1
ATR0150G007 Amborella trichopoda HOM05D007892 ORTHO05D009211 1.7e-09 68.6 54 70.4
EL10Ac4g08232 Beta vulgaris HOM05D007892 ORTHO05D009211 1.7e-09 68.6 427 30.0
Lsat_1_v5_gn_7_104640 Lactuca sativa HOM05D007892 ORTHO05D009211 2.2e-09 68.2 192 30.2
Migut.M00782 Erythranthe guttata HOM05D007892 ORTHO05D009211 2.9e-09 67.8 492 27.4
Actinidia09702 Actinidia chinensis HOM05D007892 ORTHO05D009211 3.8e-09 67.4 451 28.2
Psat0s3104g0160 Pisum sativum HOM05D007892 ORTHO05D009211 3.8e-09 67.4 404 28.2
Sabra11G0101600 Salix brachista HOM05D007892 ORTHO05D009211 5.0e-09 67.0 611 25.9
unitig_37.g12567 Utricularia gibba HOM05D007892 ORTHO05D009211 1.9e-08 65.1 461 26.2
A02p10690 Brassica napus HOM05D012500 ORTHO05D009211 5.5e-08 63.5 420 27.1
BcaC03g14367 Brassica carinata HOM05D012500 ORTHO05D009211 1.6e-07 62.0 442 25.8
BraA02t06132Z Brassica rapa HOM05D012500 ORTHO05D009211 1.6e-07 62.0 423 27.2
BolC2t07910H Brassica oleracea HOM05D012500 ORTHO05D009211 2.7e-07 61.2 430 26.3
C02p17810 Brassica napus HOM05D012500 ORTHO05D009211 6.1e-07 60.1 435 26.4
Lj1A840G45 Lonicera japonica HOM05D007892 ORTHO05D009211 8.0e-07 59.7 538 27.0
CDE05G2993 Ceratophyllum demersum HOM05D007892 ORTHO05D009211 1.4e-06 58.9 210 29.5
Sp6g16010 Schrenkiella parvula HOM05D012500 ORTHO05D009211 1.8e-06 58.5 466 25.3
PSO675G5502 Papaver somniferum HOM05D056025 ORTHO05D009211 2.3e-06 58.2 227 30.8


User provided reference genes

Program Settings