Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 8.7e-296 1019.6 537 100.0
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 5.5e-226 787.7 537 80.6
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 3.8e-182 642.1 551 70.1
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 2.4e-160 569.7 556 63.7
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 2.5e-77 293.9 573 37.0
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.5e-74 284.6 544 37.9
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 2.7e-71 273.9 577 38.6
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.3e-68 265.0 611 34.2
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 1.3e-68 265.0 559 37.4
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 6.2e-68 262.7 611 34.0
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.0e-66 257.7 587 33.9
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 1.3e-65 255.0 542 37.6
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.9e-64 251.1 608 34.0
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 1.8e-62 244.6 599 33.4
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 5.6e-61 239.6 541 33.8
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.5e-58 231.5 509 31.4
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 7.6e-58 229.2 625 34.7
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 7.6e-58 229.2 535 34.0
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 2.9e-57 227.3 646 33.4
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 1.4e-56 224.9 561 38.5
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 6.0e-55 219.5 432 38.0
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 8.7e-54 215.7 446 37.0
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.8e-51 208.0 452 34.5
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 5.5e-48 196.4 572 32.7
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 7.1e-48 196.1 381 37.5
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 1.2e-47 195.3 553 33.1
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.2e-47 195.3 274 46.4
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 2.1e-47 194.5 408 40.4
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 6.0e-47 193.0 480 33.1
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 7.9e-47 192.6 267 48.7
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 1.3e-46 191.8 361 42.4
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 2.3e-46 191.0 525 29.3
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 3.0e-46 190.7 452 35.2
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 8.7e-46 189.1 405 40.2
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 2.5e-45 187.6 553 32.0
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 5.7e-45 186.4 555 31.7
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 7.4e-45 186.0 321 38.3
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 2.1e-44 184.5 557 28.9
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 2.8e-44 184.1 472 35.6
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 6.3e-44 183.0 552 32.2
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.1e-43 182.2 548 29.7
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.1e-43 182.2 300 42.7
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.2e-42 178.7 537 31.3
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 1.2e-42 178.7 552 30.6
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 2.6e-42 177.6 268 43.3
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 3.4e-42 177.2 537 31.1
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 3.4e-42 177.2 376 40.2
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 3.4e-42 177.2 300 39.3
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.0e-41 175.6 527 31.9
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 3.8e-41 173.7 344 40.1
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 5.0e-41 173.3 395 37.7
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 5.0e-41 173.3 308 38.6
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 6.5e-41 172.9 536 28.9
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 8.5e-41 172.6 188 52.7
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 8.5e-41 172.6 288 40.3
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 3.2e-40 170.6 309 43.0
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 2.7e-39 167.5 535 31.8
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 3.6e-39 167.2 276 43.8
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 4.6e-39 166.8 311 38.9
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 7.9e-39 166.0 535 31.0
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 7.9e-39 166.0 291 43.0
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 2.3e-38 164.5 294 37.1
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 3.0e-38 164.1 546 29.9
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 6.7e-38 162.9 398 33.7
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 1.9e-37 161.4 637 29.7
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 7.4e-37 159.5 356 37.1
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 7.4e-37 159.5 328 41.2
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.3e-36 158.7 389 32.9
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 2.8e-36 157.5 284 44.7
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.7e-36 157.1 254 39.8
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.1e-35 155.6 261 37.9
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.4e-35 155.2 656 28.7
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.4e-35 154.5 416 32.2
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 5.3e-35 153.3 464 31.0
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 2.6e-34 151.0 259 41.7
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 2.6e-34 151.0 274 35.8
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 4.5e-34 150.2 342 39.2
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.0e-33 149.1 333 37.5
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 2.2e-33 147.9 324 37.7
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 2.9e-33 147.5 331 38.1
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 3.8e-33 147.1 238 44.1
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 6.5e-33 146.4 317 36.6
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.1e-32 145.6 272 40.1
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 2.5e-32 144.4 264 34.8
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 3.6e-31 140.6 310 34.2
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.4e-30 138.7 330 34.8
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 3.9e-30 137.1 256 39.1
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.0e-29 134.8 312 36.2
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 3.3e-29 134.0 185 47.6
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 4.8e-28 130.2 190 42.6
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 8.2e-28 129.4 228 39.5
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.1e-27 129.0 191 44.5
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 1.1e-27 129.0 234 41.5
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 9.1e-27 125.9 199 39.2
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.2e-26 125.6 258 37.2
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 3.4e-26 124.0 246 39.4
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 5.9e-26 123.2 285 34.4
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 2.2e-25 121.3 257 40.5
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 4.2e-24 117.1 284 34.2
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 5.5e-24 116.7 204 38.2
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 7.2e-24 116.3 284 31.3
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 9.4e-24 115.9 258 33.3
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.6e-23 115.2 284 31.7
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 3.6e-23 114.0 336 32.7
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 4.7e-23 113.6 186 43.0
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.4e-22 112.1 98 54.1
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.8e-22 111.7 185 36.2
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 7.4e-21 106.3 247 32.0
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 1.3e-20 105.5 195 36.4
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.0e-17 95.9 81 51.9
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.2e-16 90.9 153 33.3
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 2.7e-15 87.8 287 27.5
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.0e-14 85.9 183 35.5
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.0e-14 84.3 59 64.4
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 3.0e-14 84.3 169 36.1
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 3.0e-14 84.3 256 32.0
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 8.8e-14 82.8 118 44.9
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 5.7e-13 80.1 250 29.6
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 9.7e-13 79.3 361 29.9
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 1.3e-12 79.0 75 53.3
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 8.2e-12 76.3 145 30.3
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 2.4e-11 74.7 117 36.8
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.2e-10 72.4 356 24.2
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 3.5e-10 70.9 127 37.8
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 6.5e-09 66.6 111 35.1
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.1e-08 65.9 114 36.0
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 2.7e-07 61.2 182 34.1


User provided reference genes

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